New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1811455	21 (0.900)	3 (0.140)	3/240	NT	12.5%	intergenic (+20/+108)	ispD/PP_1615	2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator
	?	NC_002947	= 1811537	22 (1.000)					intergenic (+102/+26)	ispD/PP_1615	2‑C‑methyl‑D‑erythritol 4‑phosphate cytidylyltransferase/LysR family transcriptional regulator

CGACGAAGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTT  >  NC_002947/1811306‑1811604                                                                                                                                                      |                                                                                                                                                      cgacgaAGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCT                                                                                                                                                       >  1:390524‑M1/1‑150 (MQ=255)    cgaAGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCtttt                                                                                                                                                    <  2:195908/150‑1 (MQ=255)        gCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTcgcg                                                                                                                                                <  1:9957/150‑1 (MQ=255)         ccTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCgg                                                                                                                                               <  1:98989/150‑1 (MQ=255)         ccTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCgg                                                                                                                                               <  2:340084/150‑1 (MQ=255)                    gAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGcc                                                                                                                                    >  2:311559/1‑149 (MQ=255)                            cGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAAt                                                                                                                            >  1:257648/1‑150 (MQ=255)                                                     gggCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGa                                                                                                                         >  2:416114/1‑128 (MQ=255)                                                     gggCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGa                                                                                                                         <  1:416114/128‑1 (MQ=255)                                                      ggCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGa                                                                                                  <  1:236949/150‑1 (MQ=255)                                                              gACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTa                                                                                          <  2:390524/150‑1 (MQ=255)                                                               acaacaTAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTCAACGCTGAGCGTTGCCCTTGGCGGTGCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAg                                                                                         >  1:533657/1‑150 (MQ=255)                                                               acaacaTAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTcttcgcgggtaaacccgctcctacgacggtctgtgtccaaccaccgatgcaatccattgtag                                                                                         <  2:324768‑M1/150‑63 (MQ=255)                                                                 aacaTAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCAGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGa                                                                                       >  2:263469/1‑150 (MQ=255)                                                                        aGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGGGCGGGtt                                                                                <  2:383065/150‑1 (MQ=255)                                                                               ccGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAGCCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCcgc                                                                         >  2:432687/1‑150 (MQ=255)                                                                               ccGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCcgc                                                                         >  2:416948/1‑150 (MQ=255)                                                                                    ccGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTcttcgcgggtaaacccgctcctacgacggtctgtgtccaaccaccgatgcaatccattgtaggagcgggtttacccgcgaaaa                                                                    >  2:149113‑M1/1‑67 (MQ=255)                                                                                    ccGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGa                                                                    <  1:232404‑M2/150‑2 (MQ=255)                                                                                      gAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATATGTGTTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGagg                                                                  <  1:67067‑M2/150‑4 (MQ=255)                                                                                       aaGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAGCCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGaggc                                                                 >  1:432687‑M2/1‑146 (MQ=255)                                                                                        aGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTcttcgcgggtaaacccgctcctacgacggtctgtgtccaaccaccgatgcaatccattgtaggagcgggtttacccgcgaaaaggcc                                                                <  1:149113‑M1/150‑88 (MQ=255)                                                                                                          ccAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATcc                                              <  1:416948/150‑1 (MQ=255)                                                                                                            aGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTCACCCGCGAAGaggc                                                                 >  1:20743‑M2/1‑125 (MQ=255)                                                                                                            aGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTCACCCGCGAAGaggc                                                                 <  2:20743‑M2/129‑5 (MQ=255)                                                                                                               gcTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCa                                         >  1:294960/1‑150 (MQ=255)                                                                                                                         tAAACGCTGCGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGGGGTTGGACACAGACCCTCGTAGGAGCGGGTGTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGa                               <  1:596119/150‑1 (MQ=255)                                                                                                                         tAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGa                               <  2:533657/150‑1 (MQ=255)                                                                                                                            aCGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTAcc                                                                            <  1:492790/102‑1 (MQ=255)                                                                                                                            aCGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTAcc                                                                            >  2:492790/1‑102 (MQ=255)                                                                                                                                         tcCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCg               >  1:173717/1‑150 (MQ=255)                                                                                                                                                  ggCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGaggccagcccaggagaacgctcagcgtttacccgcccagcgctggcgcaaccattcgagatct      <  1:149113‑M2/150‑64 (MQ=255)                                                                                                                                                   gCCTcttcgcgggtgaacccgctcctacgacggtctgtgtccaaccaccgatgcaatccattgtaggagcgggtttacccgcgaaaaggccagcccaggagaacgctcagcgtttacccgcccagcgct                          <  2:20743‑M1/129‑126 (MQ=255)                                                                                                                                                   gCCTcttcgcgggtgaacccgctcctacgacggtctgtgtccaaccaccgatgcaatccattgtaggagcgggtttacccgcgaaaaggccagcccaggagaacgctcagcgtttacccgcccagcgct                          >  1:20743‑M1/1‑4 (MQ=255)                                                                                                                                                   gCCTcttcgcgggtaaacccgctcctacgacggtctgtgtccaaccaccgatgcaatccattgtaggagcgggcttacccgcgaaaaggccagcccaggagaacgctcagcgtttacccgcccagcgctggcgcaaccattcgagatctt     >  1:432687‑M1/1‑4 (MQ=255)                                                                                                                                                   gCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAAcccccc     >  2:487945/1‑148 (MQ=255)                                                                                                                                                    ccTcttcgcgggtaaacccgctcctacgacggtctgtgtccaaacacatatgcaatccattgtaggagcgggtttacccgcgaaaaggccagcccaggagaacgctcagcgtttacccgcccagcgctggcgcaaccattcgagatcttc    <  1:67067‑M1/150‑148 (MQ=255)                                                                                                                                                      ttttCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGaggccagcccaggagaacgctcagcgtttacccgcccagcgctggcgcaaccattcgagatcttcgg  >  2:149113‑M2/1‑83 (MQ=255)                                                                                                                                                      tcttcgcgggtaaacccgctcctacgacggtctgtgtccaaccaccgatgcaatccattgtaggagcgggtttacccgcgaaaaggccagcccaggagaacgctcagcgtttacccgcccagcgctggcgcaaccattcgagatcttcgg  <  1:232404‑M1/150‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      CGACGAAGCCTCGGCCATCGAATGGTCCGGTCAGGCGCCGCGGCTGGTGGAAGGGCGCAGTGACAACATAAAGGTGACCCGGCCCGAAGATCTCGAATGGTTGCGCCAGCGCTGGGCGGGTAAACGCTGAGCGTTCTCCTGGGCTGGCCTTTTCGCGGGTAAACCCGCTCCTACAATGGATTGCATCGGTGGTTGGACACAGACCGTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACCAGCAGCACATCCCGTCAGCCGAAACGATACTCCGGCAACCCCGCCAACCCCTCCTT  >  NC_002947/1811306‑1811604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.