| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2274124 = | 29 (1.240) | 5 (0.230) | 4/238 | NT | 16.6% | coding (286/1041 nt) | PP_2004 | AraC family transcriptional regulator |
| ? | NC_002947 | 2274156 = | 23 (1.050) | coding (254/1041 nt) | PP_2004 | AraC family transcriptional regulator | |||||
ATCGAAATGAGCGGTGAGGCCGCTTTAGGTCTGCGTATGGGGCGCCTCAGCCGGCTGGCGCATACGGGCCTGGCCGGGGTCACTGCGGCCCAGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2274220‑2274124‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggcccGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCATGTGCATGTAGCGGGGTATGGACAGGCGTGCGCCGGCTTCG > NC_002947/2274156‑2274275 ATCGAAATGAGCGGTGAGGCCGCTTTAGGTCTGCGTATGGGGCGCCTCAGCCGGCTGGCGCATACGGGCCTGGCCGGGGTCACTGCGGCCCAG < 1:174314/93‑1ATCGAAATGAGCGGTGAGGCCGCTTTAGGTCTGCGTATGGGGCGCCTCAGCCGGCTGGCGCATACGGGCCTGGCCGGGGTCACTGCGGCCCAG > 2:174314/1‑93 GCCTGGCCGGGGTCACTGCGGCCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCATGTGCATGTAGCGGGGTATGGACAGGCGTGCGCCGGCTTCG > 1:541598/1‑150 GCCTGGCCGGGGTCACTGCGGCCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGAT < 1:436155/95‑1 GCCTGGCCGGGGTCACTGCGGCCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGAT > 2:436155/1‑95 CTGGCCGGGGTCACTGCGGCCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCG < 1:438626/73‑1 CTGGCCGGGGTCACTGCGGCCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCG > 2:438626/1‑73 ATCGAAATGAGCGGTGAGGCCGCTTTAGGTCTGCGTATGGGGCGCCTCAGCCGGCTGGCGCATACGGGCCTGGCCGGGGTCACTGCGGCCCAGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2274220‑2274124‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggcccGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCATGTGCATGTAGCGGGGTATGGACAGGCGTGCGCCGGCTTCG > NC_002947/2274156‑2274275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |