New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2274124 =	29 (1.240)	5 (0.230)	4/238	NT	16.6%	coding (286/1041 nt)	PP_2004	AraC family transcriptional regulator
	?	NC_002947	2274156 =	23 (1.050)					coding (254/1041 nt)	PP_2004	AraC family transcriptional regulator

TAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCATGTGCATGTAGCGGGGTATGGACAGGCGTGCGCCGGCTTCGCTCAGGCGGGTCGCGTC  >  NC_002947/2274009‑2274292                                                                                                                                                    |                                                                                                                                         tAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTa                                                                                                                                        >  2:270391/1‑150 (MQ=255)  aGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTAt                                                                                                                                       <  2:253554/150‑1 (MQ=255)      gcgcAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGGCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATgagc                                                                                                                                   >  2:85301/1‑150 (MQ=255)      gcgcAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATgcgc                                                                                                                                   >  1:523385/1‑150 (MQ=255)        gcAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGGGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCa                                                                                                                                 <  2:608173/150‑1 (MQ=255)                    ccTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGgc                                                                                                                     >  1:400846/1‑150 (MQ=255)                                             aTGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGc                                                                                            <  2:538671/150‑1 (MQ=255)                                                     ggTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGc                                                                                    <  1:296367/150‑1 (MQ=255)                                                     ggTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCCTATGCGCCAGCCGGCCGAGGCCCCCCCTACGCCGCCCTCAAGCGGCCTCAcccc                                                                                    >  2:487813/1‑148 (MQ=255)                                                         gTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCAt                                                                                <  1:270391/150‑1 (MQ=255)                                                              ccGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTAGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCACGTCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGa                                                                           <  1:347966/150‑1 (MQ=255)                                                               cgcgTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGAt                                                                          >  2:488338/1‑150 (MQ=255)                                                                       gCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGt                                                                  >  2:318305/1‑150 (MQ=255)                                                                          gCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGc                                                               <  1:488338/150‑1 (MQ=255)                                                                            tCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGACTGCGTGGcac                                                             >  2:260866/1‑148 (MQ=255)                                                                              gAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCAt                                                           <  1:569585/150‑1 (MQ=255)                                                                                aaCGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCAtgt                                                         >  2:265793/1‑150 (MQ=255)                                                                                  cGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCATGTGc                                                       >  2:65843/1‑150 (MQ=255)                                                                                  cGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCATGTGc                                                       <  1:605176/150‑1 (MQ=255)                                                                                   gcagcaGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCATGTGCa                                                      <  2:523385/150‑1 (MQ=255)                                                                                                       tCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCATGTGCATGTAGCGGGGTATGGACAgg                                  <  2:400846/150‑1 (MQ=255)                                                                                                            cAGGGTTGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCATGTGCATGTAGCGGGGTATGGACAGGCGTgc                             <  1:487813/150‑1 (MQ=255)                                                                                                                      gcctggccggggtcactgcggcccaggcccGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGAt                                                                          >  2:436155‑M2/31‑95 (MQ=255)                                                                                                                      gcctggccggggtcactgcggcccaggcccGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGAt                                                                          <  1:436155‑M2/65‑1 (MQ=255)                                                                                                                      gcctggccggggtcactgcggcccaggcccGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCATGTGCATGTAGCGGGGTATGGACAGGCGTGCGCCGGCTTCg                   >  1:541598‑M2/31‑150 (MQ=255)                                                                                                                        ctggccggggtcactgcggcccaggcccGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCg                                                                                              >  2:438626‑M2/29‑73 (MQ=255)                                                                                                                        ctggccggggtcactgcggcccaggcccGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCg                                                                                              <  1:438626‑M2/45‑1 (MQ=255)                                                                                                                        CTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGAt                                                                          >  2:174314‑M1/1‑93 (MQ=255)                                                                                                                        CTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGAt                                                                          <  1:174314‑M1/93‑1 (MQ=255)                                                                                                                               gCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCATGTGCATGTAGCGGGGTATGGACAGGCGTGCGCCGGCTTCGCTCAGGCgg          <  2:92505/150‑1 (MQ=255)                                                                                                                                  gTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGc                                                                    <  2:460547/89‑1 (MQ=255)                                                                                                                                  gTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGc                                                                    >  1:460547/1‑89 (MQ=255)                                                                                                                                       cccGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCATGTGCATGTAGCGGGGTCTGCACAGGCGGTCGGCGGCGTCGCTCAGGCGGGTCGCGTc  >  1:441579/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                         TAGAAGCGCAGCCAGGCGCCCTGGGCATCTTCCTCAAAGCGGGAATGGCCGCGGTAGTTGGCCGCGTAAAGCGGCTCGAAACGCAGCAGGGTACGCGCGGCCTCGCCCAGGGTGGGGGCCTGGGCCGCAGTGACCCCGGCCAGGCCCGTATGCGCCAGCCGGCTGAGGCGCCCCATACGCAGACCTAAAGCGGCCTCACCGCTCATTTCGATGGCTGCGTGGCCCATGTGCATGTAGCGGGGTATGGACAGGCGTGCGCCGGCTTCGCTCAGGCGGGTCGCGTC  >  NC_002947/2274009‑2274292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.