New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3846594	28 (1.200)	4 (0.180)	4/248	NT	11.5%	coding (147/966 nt)	PP_3395	LysR family transcriptional regulator
	?	NC_002947	= 3846629	34 (1.490)					coding (112/966 nt)	PP_3395	LysR family transcriptional regulator

CAGGCGTTCCATGGCGCGGGTCATTTCCCTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3846444‑3846594 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcACCATCGCCCGCGCAGGCGAGCGCGCGTTCATGGCGCCGT  <  NC_002947/3846629‑3846590                                                                                                                                                                                                 CAGGCGTTCCATGGCGCGGGTCATTTCCCTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGG                                           >  2:574116/1‑150                                GCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCACCATCGCCCGCGCAGGCGAGCGCGCGTTC            >  2:39663/1‑150                                          GCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCACCATCGCCCGCGCAGGCGAGCGCGCGTTCATGGCGCCGT  <  1:39663/150‑1                                                                    TCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCACCATCGCCCGCGCGGGCGAGCGCGCGTTCATGGC       >  1:317946/1‑119                                                                    TCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCACCATCGCCCGCGCGGGCGAGCGCGCGTTCATGGC       <  2:317946/119‑1                                                                                                                                                                                                 CAGGCGTTCCATGGCGCGGGTCATTTCCCTGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3846444‑3846594 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcACCATCGCCCGCGCAGGCGAGCGCGCGTTCATGGCGCCGT  <  NC_002947/3846629‑3846590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.