New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 384659428 (1.200)4 (0.180) 4/248 NT 11.5% coding (147/966 nt) PP_3395 LysR family transcriptional regulator
?NC_002947 = 3846629 34 (1.490)coding (112/966 nt) PP_3395 LysR family transcriptional regulator

TGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGAAGGGACCGCCGTAGCACTGTAGCAAAAACCGCATT  >  NC_002947/3846473‑3846741
                                                                                                                         |                                                                                                                                                   
tGGCATGGCGCAGCAGTGCAATCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGACTGcgcgag                                                                                                                         <  2:316409/150‑3 (MQ=255)
  gCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCaccatcgcccgcgcaggcgagcgcgcgttc                                                                                                                       >  2:39663‑M1/1‑120 (MQ=255)
     tGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATg                                                                                                                    <  1:198741/150‑1 (MQ=255)
            gcagTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCaccatcgcccgcgcaggcgagcgcgcgttcatggcgccgt                                                                                                             <  1:39663‑M1/150‑41 (MQ=255)
                     gCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAga                                                                                                    <  1:405009/150‑1 (MQ=255)
                       cccGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAACGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAgacg                                                                                                  >  1:534203/1‑150 (MQ=255)
                         cgccgGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAgacgac                                                                                                <  2:534203/150‑1 (MQ=255)
                            cgGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCACTGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGAt                                                                                             <  2:365798/150‑1 (MQ=255)
                                   ggCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAgg                                                                                      >  2:583501/1‑150 (MQ=255)
                                    gCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGAcgacga                                                                                              <  1:250323/141‑1 (MQ=255)
                                    gCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGAcgacga                                                                                              >  2:250323/1‑141 (MQ=255)
                                      tCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCaccatcgcccgcgcgggcgagcgcgcgttcatggc                                                                                                                  >  1:317946‑M1/1‑84 (MQ=255)
                                      tCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCaccatcgcccgcgcgggcgagcgcgcgttcatggc                                                                                                                  <  2:317946‑M1/119‑36 (MQ=255)
                                        cACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAg                                                                                 <  1:574116/150‑1 (MQ=255)
                                         aCGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAgg                                                                                >  1:360838/1‑150 (MQ=255)
                                             cgcgCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGaaa                                                                            <  2:81809/150‑1 (MQ=255)
                                               cgcTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAgg                                                                          <  1:550013/150‑1 (MQ=255)
                                                    gCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTc                                                                     <  2:360838/150‑1 (MQ=255)
                                                     cTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCg                                                                    >  2:481392/1‑150 (MQ=255)
                                                      tACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCCTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGa                                                                   <  1:583501/150‑1 (MQ=255)
                                                                    gCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCt                                                     <  1:304963/150‑1 (MQ=255)
                                                                             aaGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGc                                            >  1:478751/1‑150 (MQ=255)
                                                                                cgcgcCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTg                                         <  2:478751/150‑1 (MQ=255)
                                                                                  cgcCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTggg                                       <  2:324462/150‑1 (MQ=255)
                                                                                     cTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGaa                                    >  1:137427/1‑150 (MQ=255)
                                                                                       cAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGAAgg                                  >  2:265313/1‑150 (MQ=255)
                                                                                                 aaTACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGAAGGGACCGCCGTa                        <  2:137427/150‑1 (MQ=255)
                                                                                                  aTACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTgg                                        <  2:304285/133‑1 (MQ=255)
                                                                                                  aTACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTgg                                        >  1:304285/1‑133 (MQ=255)
                                                                                                   tACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTTGCTCGGCTTGGGGAAGGGACCGCCGTAGc                      >  2:338297/1‑150 (MQ=255)
                                                                                                      gTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGAAGGGACCGCCGTAGCACt                   >  2:420566/1‑150 (MQ=255)
                                                                                                         tACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTTGCTCGGCTTGGGGAAGGGACCGCCGTAGCACTGTa                <  1:338297/150‑1 (MQ=255)
                                                                                                                     acggcgCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTgccgtccgccgtcagtaaacgtatttcagacattgaggcgcgctttggcaccgccttgctcaaacgtagcaagcgcggcgtggagcccaccccggcggggcttgcactgc    <  1:39663‑M2/150‑111 (MQ=255)
                                                                                                                     acggcgCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGAAGGGACCGCCGTAGCACTGTAGCAAAAACCGCa    >  1:511834/1‑150 (MQ=255)
                                                                                                                       ggcgCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGCAGGGACCGCCGTAGCACTGTAGCAAAAACCGCAtt  <  1:415369/150‑1 (MQ=255)
                                                                                                                         |                                                                                                                                                   
TGGCATGGCGCAGCAGTGCAAGCCCCGCCGGGGTGGGCTCCACGCCGCGCTTGCTACGTTTGAGCAAGGCGGTGCCAAAGCGCGCCTCAATGTCTGAAATACGTTTACTGACGGCGGACGGCGCCATGAACGCGCGCTCGCCTGCGCGGGCGATGGTGCCTTCTTCGCAGACGACGATGAACAGGTTCAGGGAAAGGTGGTCGAGGGGTTGCATCGCTTGGCTCGGCTTGGGGAAGGGACCGCCGTAGCACTGTAGCAAAAACCGCATT  >  NC_002947/3846473‑3846741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.