New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4218259	11 (0.470)	3 (0.140)	3/238	NT	23.7%	coding (1082/1500 nt)	PP_3698	hypothetical protein
	?	NC_002947	= 4218300	9 (0.410)					coding (1041/1500 nt)	PP_3698	hypothetical protein

TCAGCCGGACGCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4218163‑4218259 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgccaGGCGATCAGGCGTACGCCGGTACCCATTCCTCCGGTTGGTATGGCGCTGTTTGGGGTGCCCGCTGTCGAGCGCCTGAGATTCAAAGCAATTGCCGAGGAGCATGCGCCAACTCTGGATCTGACACCGCGTCCGGCTGACCTA  <  NC_002947/4218300‑4218159                                                                                                                                                                                                                                                 TCAGCCGGACGCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCAGGCGATCAGGCGTACGCCGGTACCCATTCCTCCGGTTGGTATGGCGCTGTTTG                                                                                           <  1:317717/150‑1           GCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCAGGCGATCAGGCGTACGCCGGTACCCATTCCTCCGGTTGGTATGGCGCTGTTTGGG                                                                                         <  1:334173/142‑1           GCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCAGGCGATCAGGCGTACGCCGGTACCCATTCCTCCGGTTGGTATGGCGCTGTTTGGG                                                                                         >  2:334173/1‑142                                                                                          CAGCCCCAGGCGATCAGGCGGACGCCGGTACCCATTCCTCCGGTTGGTATGGCGCTGTTTGGGGTGCCCGCTGTCGAGCGCCTGAGATTCAAAGCAATTGCCGAGGAGCATGCGCCAACTCTGGATCTGACACCGCGTCCGGCTGACCTA  <  1:330697/150‑1                                                                                                                                                                                                                                                 TCAGCCGGACGCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4218163‑4218259 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgccaGGCGATCAGGCGTACGCCGGTACCCATTCCTCCGGTTGGTATGGCGCTGTTTGGGGTGCCCGCTGTCGAGCGCCTGAGATTCAAAGCAATTGCCGAGGAGCATGCGCCAACTCTGGATCTGACACCGCGTCCGGCTGACCTA  <  NC_002947/4218300‑4218159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.