| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4218259 | 11 (0.470) | 3 (0.140) | 3/238 | NT | 23.7% | coding (1082/1500 nt) | PP_3698 | hypothetical protein |
| ? | NC_002947 | = 4218300 | 9 (0.410) | coding (1041/1500 nt) | PP_3698 | hypothetical protein | |||||
CGGTCGAGTCCGTCAAATGATTGCCAGAACTCGTCCTCAATCTGCTCTAGGTCAGCCGGACGCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCATACCAACCGGAGGAATGGGTACCGGCGTACGCCTGATCGCCTGGCGCTGCCAATTGATCCTTAATGCCAAGCTCAAAAACTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTT > NC_002947/4218112‑4218401 | cgGTCGAGGCCGTCAAATGATTGCCAGAACTCGTCCTCAATCTGCTCTAGGTCAGCCGGACGCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCATa < 2:159633/150‑1 (MQ=255) ccGTCAAATGATTGCCAGAACTCGTCCTCAATCTGCTCTAGGTCAGCCGGACGCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCATACCAACCgga < 2:326479/150‑1 (MQ=255) cGTCAAATGATTGCCAGAACTCGTCCTCAATCTGCTCTAGGTCAGCCGGACGCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCCGGCGCTCGACAGCGGGCACCCCAAACAGCGCCATACCAACCggag < 2:576183/150‑1 (MQ=255) gTCAAATGATTGCCAGAACTCGTCCTCAATCTGCTCTAGGTCAGCCGGACGCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCATa < 1:164485/139‑1 (MQ=255) gTCAAATGATTGCCAGAACTCGTCCTCAATCTGCTCTAGGTCAGCCGGACGCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCATa > 2:164485/1‑139 (MQ=255) aaTGATTGCCAGAACTCGTCCTCAATCTGCTCTAGGTCAGCCGGACGCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCATACCAACCggag > 1:194632/1‑145 (MQ=255) aaTGATTGCCAGAACTCGTCCTCAATCTGCTCTAGGTCAGCCGGACGCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCATACCAACCggag < 2:194632/145‑1 (MQ=255) tAGGTCAGCCGGACGCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCATACCAACCGGAGGAATGGGTACCGGCGTCCGCCTGATCGCCtggggctg < 1:330697‑M2/150‑9 (MQ=255) tCAGCCGGACGCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCAggcgatcaggcgtacgccggtacccattcctccggttggtatggcgctgtttg < 1:317717‑M1/150‑54 (MQ=255) aGCCGGACGCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCATACCAACCGGAGGAATGGGTACCCGCGTACGCCTGATCGCCTGGCGCTGCCAAtt < 1:276487/150‑1 (MQ=255) ccGGACGCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCATACCAACCGGAGGAATGGGTACCGGCGTACGCCTGATCGCCTGGCGCTGCCAATTGa < 1:30194/150‑1 (MQ=255) gcgGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCAggcgatcaggcgtacgccggtacccattcctccggttggtatggcgctgtttggg > 2:334173‑M1/1‑87 (MQ=255) gcgGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCAggcgatcaggcgtacgccggtacccattcctccggttggtatggcgctgtttggg < 1:334173‑M1/142‑56 (MQ=255) gcATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCATACCAACCGGAGGAATGGGTACCGGCGTACGCCTGATCGCCTGGCGCTGCCAATTGATCCTTAATGCCAAGCTCAAAAACTCATTg > 1:511863/1‑150 (MQ=255) tcGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCATACCAACCGGAGGAATGGGTACCGGCGTACGCCTGATCGCCTGGCGCTGCCAATTGATCCATCATGGTGAGCTCAAAAACTCATTGAGCAGGTGa > 1:156643/1‑150 (MQ=255) gCTTTGAATCTCAGGCGCTCCACAGCGGGCACCCCAAACAGCGCCATACCAACCGGAGGAATGGGTACCGGCGTACGCCTGATCGCCTGGCGCTGCCAATTTATCCTTAATGCCAAGCTCAAAAACTCATTGAGCAGGTGACCCACACgg < 2:240749/150‑1 (MQ=255) ttGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCATACCAACCGGAGTAATGGGTAAAGACCTACGCCTGATCGCCTGGCGCTGCCAATTGATCCTTAATGCCAAGCTCAAAAACTCATTGAGCAGGTGACCCACACGGTGa < 2:49964/150‑1 (MQ=255) cccAAACAGCGCCATACCAACCGGAGGAATGGGTACCGGCGTACGCCTGATCGCCtggcgctgtttggggtgcccgctgtcgagcgcctgagattcaaagcaattgccgaggagcatgcgccaactctggatctgacaccgc < 1:334173‑M2/142‑88 (MQ=255) cccAAACAGCGCCATACCAACCGGAGGAATGGGTACCGGCGTACGCCTGATCGCCtggcgctgtttggggtgcccgctgtcgagcgcctgagattcaaagcaattgccgaggagcatgcgccaactctggatctgacaccgc > 2:334173‑M2/1‑55 (MQ=255) cAAACAGCGCCATACCAACCGGAGGAATGGGTACCGGCGTACGCCTGATCGCCtggcgctgtttggggtgcccgctgtcgagcgcctgagattcaaagcaattgccgaggagcatgcgccaactctggatctgacaccgcgtccggctga < 1:317717‑M2/150‑98 (MQ=255) cAAACAGCGCCATACCAACCGGAGGAATGGGTACCGGCGTACGCCTGATCGCCTGGCGCTGCCAATTGATCCTTAATGCCAAGCTCAAAAACTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGc > 2:33750/1‑150 (MQ=255) cAGCCCCAggcgatcaggcggacgccggtacccattcctccggttggtatggcgctgtttggggtgcccgctgtcgagcgcctgagattcaaagcaattgccgaggagcatgcgccaactctggatctgacaccgcgtccggctgaccta < 1:330697‑M1/150‑143 (MQ=255) | CGGTCGAGTCCGTCAAATGATTGCCAGAACTCGTCCTCAATCTGCTCTAGGTCAGCCGGACGCGGTGTCAGATCCAGAGTTGGCGCATGCTCCTCGGCAATTGCTTTGAATCTCAGGCGCTCGACAGCGGGCACCCCAAACAGCGCCATACCAACCGGAGGAATGGGTACCGGCGTACGCCTGATCGCCTGGCGCTGCCAATTGATCCTTAATGCCAAGCTCAAAAACTCATTGAGCAGGTGACCCACACGGTGATGCTCAGCGACTAGGCCAGTTTTCAAGAAGCTCTT > NC_002947/4218112‑4218401 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |