New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6062179	25 (1.070)	4 (0.180)	4/248	NT	15.3%	coding (581/1149 nt)	alkT	rubredoxin‑NAD(+) reductase
	?	NC_002947	= 6062220	20 (0.880)					coding (540/1149 nt)	alkT	rubredoxin‑NAD(+) reductase

TCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6062068‑6062179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGGGCTGGAGGGCCTGGGTGTACGCTTCCACCTGGGGCCGGTGCTGACCCGTCTTCAGCAGGTGACTCAAGGCCTGGAGGCGCACTTGTCGGACGGCAGCGTGATCGC  <  NC_002947/6062220‑6062074                                                                                                                                                                                                                                                                     TCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTTAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGG                                                                                                               <  1:314699/150‑1       GCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGGGC                                                                                                         <  2:592600/150‑1                                GCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGGGCTGGAGGGCCTGGGTGTAC                                                                                       >  1:379056/1‑143                                GCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGGGCTGGAGGGCCTGGGTGTAC                                                                                       <  2:379056/143‑1                                                                                                              GCCGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGGGCTGGAGGGCCTGGGTGTACGCTTCCACCTGGGGCCGGTGCTGACCCGTCTTCAGCAGGTGACTCAAGGCCTGGAGGCGCACTTGTCGGACGGCAGCGTGATCGC  <  2:606519/150‑1                                                                                                               CCGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGGGCTGGAGGGCCTGGGTGTACGCT                                                                                    >  1:589885/1‑67                                                                                                               CCGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGGGCTGGAGGGCCTGGGTGTACGCT                                                                                    <  2:589885/67‑1                                                                                                                                                                                                                                                                     TCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6062068‑6062179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGGGCTGGAGGGCCTGGGTGTACGCTTCCACCTGGGGCCGGTGCTGACCCGTCTTCAGCAGGTGACTCAAGGCCTGGAGGCGCACTTGTCGGACGGCAGCGTGATCGC  <  NC_002947/6062220‑6062074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.