New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6062179	25 (1.070)	4 (0.180)	4/248	NT	15.3%	coding (581/1149 nt)	alkT	rubredoxin‑NAD(+) reductase
	?	NC_002947	= 6062220	20 (0.880)					coding (540/1149 nt)	alkT	rubredoxin‑NAD(+) reductase

GCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACGCTGCTTGCCAGCGGCGGCAGCACGGAAGCGTGCGTAGTCTTC  >  NC_002947/6062074‑6062369                                                                                                                                                   |                                                                                                                                                      gCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCggc                                                                                                                                                    <  2:606519‑M2/150‑4 (MQ=255)           tGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGtt                                                                                                                                          <  2:69249/150‑1 (MQ=255)           tGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGtt                                                                                                                                          <  2:30000/150‑1 (MQ=255)             ccGTCCGACAAGTGCGCCTCCAGGCCTTGATTTACCTGCTGAAGACGGGTCAGTACCGGCCCCAGGTAGAAGCGTACACCCTGGCCCTCCACCCCACCCTGCACAGCCGCCGCACCGGCCGGGTGCAGCAGGGTCGGCATGATCTGGTca                                                                                                                                        <  2:32748/150‑1 (MQ=255)                               tCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCacac                                                                                                                                     >  2:52354/1‑135 (MQ=255)                               tCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCacac                                                                                                                                     <  1:52354/135‑1 (MQ=255)                                       ttGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCa                                                                                                                                                   >  1:354697/1‑113 (MQ=255)                                       ttGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCa                                                                                                                                                   <  2:354697/113‑1 (MQ=255)                                            tCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAgccgc                                                                                                         >  1:506435/1‑150 (MQ=255)                                              aCCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGccc                                                                                                       >  2:593790/1‑150 (MQ=255)                                                 tgctgcAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGAGCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAgg                                                                                                    <  2:444954/150‑1 (MQ=255)                                                 tgctgAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAgg                                                                                                    <  1:327824/150‑1 (MQ=255)                                                    tgAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTc                                                                                                 >  1:53851/1‑150 (MQ=255)                                                     gAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCa                                                                                                <  1:598466/150‑1 (MQ=255)                                                       aGACGGGTCAGCACCGGCCCCGGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATg                                                                                              <  1:606519/150‑1 (MQ=255)                                                         aCGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTc                                                                                            <  2:506435/150‑1 (MQ=255)                                                             gTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGttt                                                                                        >  2:514582/1‑150 (MQ=255)                                                                                   aGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCgg                                                                                                                                                     >  1:589885‑M2/1‑65 (MQ=255)                                                                                   aGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCgg                                                                                                                                                     <  2:589885‑M2/67‑3 (MQ=255)                                                                                      gTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCggctggagggcctgggtgtacgcttccacctggggccggtgctgacccgtcttcagcaggtgactcaaggcctggaggcgc                                                                      <  2:379056‑M2/143‑82 (MQ=255)                                                                                      gTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCggctggagggcctgggtgtacgcttccacctggggccggtgctgacccgtcttcagcaggtgactcaaggcctggaggcgc                                                                      >  1:379056‑M2/1‑62 (MQ=255)                                                                                            ccAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGa                                                         >  1:118801/1‑150 (MQ=255)                                                                                            ccAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGa                                                         >  2:415573/1‑150 (MQ=255)                                                                                                        gCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCggctggagggcctgggtgtacgcttccacctggggccggtgctgacccgtcttcagcaggtgactcaaggcctggaggcgcacttgtcggacggcagcgtgatcgc                                             <  2:592600‑M2/150‑107 (MQ=255)                                                                                                              ccTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTGggctggagggcctgggtgtacgcttccacctggggccggtgctgacccgtcttaagcaggtgactcaaggcctggaggcgcacttgtcggacggcagcgtgatcgcctgcga                                       <  1:314699‑M2/150‑113 (MQ=255)                                                                                                                            gcAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGAt                                                     <  2:362783/122‑1 (MQ=255)                                                                                                                            gcAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGAt                                                     >  1:362783/1‑122 (MQ=255)                                                                                                                                    cGGGTGCAGCCGGGTCGGCATGATCTGATCACCCGCCACCGGGTCTTGGACCTTGAAGCCGCCCAGGCTCCTGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACGCTGCTTGCCAGCGGCGGCAGCACGGaa                 <  1:593790/150‑1 (MQ=255)                                                                                                                                             cagGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACGCTGCTTGCCAGCGGCGGCAGCACGGAAGCGTGCGTa        <  1:514582/150‑1 (MQ=255)                                                                                                                                               gggTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACGCTGCTTGCCAGCGGCGGCAGCACGGAAGCGTGCGTAGt      <  1:209335/150‑1 (MQ=255)                                                                                                                                                   cGGCATGATCTGTTCACACGGCGCCACAACGTCCACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACGCTGCTTGGCAGCGGCGGCAGCACGGAAGCGTGCGTAGTCTTc  <  1:413397/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                      GCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACGCTGCTTGCCAGCGGCGGCAGCACGGAAGCGTGCGTAGTCTTC  >  NC_002947/6062074‑6062369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.