New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3522745 =	19 (0.820)	8 (0.390)	4/224	NT	29.8%	intergenic (+489/‑208)	PP_5584/PP_3113	hypothetical protein/transposase
	?	NC_002947	3522832 =	21 (1.020)					intergenic (+576/‑121)	PP_5584/PP_3113	hypothetical protein/transposase

CTGGCCGCGGCCGTCCCCGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACA  >  NC_002947/3522596‑3522890                                                                                                                                                      |                                                                                                                                                  tttcgactttggcgtcgggtcgcatcatggtcggcgagctccagaaagaaatcgggagcacagcatcggggatcaggtaagcgctttgaatgtggggttcatggagcgcttacgagccaatgccaggcctgttgcgcctgctggagcatg                                                                                                                                                   >  1:218775‑M1/150‑150 (MQ=255)  ttcttttttggcgtcggggtgcatcatggtcggcgagctccagaaagaaatcgggcgcacagcatcggggatcaggtaagcgctttgaatgtggggttcatggagcgcttacgagccaatgctaggcctgatgcgcctgctggagcatGc                                                                                                                                                  >  2:460497‑M1/149‑150 (MQ=255)                       aTGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCa                                                                                                                             >  1:164868/1‑150 (MQ=255)                                                               cAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGca                                                                                     <  2:112828/150‑1 (MQ=255)                                                                            ccGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCa                                                                        <  1:285154/150‑1 (MQ=255)                                                                                     tttgaatgtggggttcatggagcgcttacgagccaatgccaggcctgttgcgcctgctggagcatGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGc                                                                          <  2:94489‑M1/74‑1 (MQ=255)                                                                                     tttgaatgtggggttcatggagcgcttacgagccaatgccaggcctgttgcgcctgctggagcatGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGc                                                                          >  1:94489‑M1/66‑139 (MQ=255)                                                                                     tAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTgg                                                               <  2:173379/150‑1 (MQ=255)                                                                                             tggggttcatggagcgcttacgagccaatgccaggcctgttgcgcctgctggagcatGCCCAGGCCCATGGCAT‑CGGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTgg                                                               >  1:451965‑M1/58‑141 (MQ=255)                                                                                             tggggttcatggagcgcttacgagccaatgccaggcctgttgcgcctgctggagcatGCCCAGGCCCATGGCAT‑CGGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTgg                                                               <  2:451965‑M1/84‑1 (MQ=255)                                                                                                 gttcatggagcgcttacgagccaatgccaggcctgttgcgcctgctggagcatGCCCAGGCCCATGGCAT‑CGGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACAt                                                                                  <  1:299326‑M1/65‑1 (MQ=255)                                                                                                 gttcatggagcgcttacgagccaatgccaggcctgttgcgcctgctggagcatGCCCAGGCCCATGGCAT‑CGGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACAt                                                                                  >  2:299326‑M1/54‑118 (MQ=255)                                                                                                   cGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCcagcag                                                 <  2:257049/150‑1 (MQ=255)                                                                                                     gTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGgc                                               >  2:398177/1‑150 (MQ=255)                                                                                                              gTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGc                                      <  1:398177/150‑1 (MQ=255)                                                                                                                gCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCt                                    <  1:514751/150‑1 (MQ=255)                                                                                                                 ccAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACGTGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTg                                   >  2:410408/1‑150 (MQ=255)                                                                                                                    gccaatgccaggcctgttgcgcctgctggagcatGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATgg                                                                     >  1:611182‑M1/35‑113 (MQ=255)                                                                                                                    gccaatgccaggcctgttgcgcctgctggagcatGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATgg                                                                     <  2:611182‑M1/79‑1 (MQ=255)                                                                                                                             ccaccaGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTcacc                                                                                          >  1:297708/1‑83 (MQ=255)                                                                                                                             ccaccaGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTcacc                                                                                          <  2:297708/83‑1 (MQ=255)                                                                                                                               accaGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTaa                     >  1:429493/1‑150 (MQ=255)                                                                                                                                ccaGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAg                    <  1:420139/150‑1 (MQ=255)                                                                                                                                 caGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAgc                   >  1:115147/1‑150 (MQ=255)                                                                                                                                     acaTGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTTGCTCGTAAGCGCTc               >  2:492176/1‑150 (MQ=255)                                                                                                                                            cAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAAc        <  1:96612/150‑1 (MQ=255)                                                                                                                                            cAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAACCGCTTTTCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAAc        <  2:570139/150‑1 (MQ=255)                                                                                                                                             aaaGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAAc        <  1:530307/149‑1 (MQ=255)                                                                                                                                             aaaGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAAc        >  2:530307/1‑149 (MQ=255)                                                                                                                                                  gCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCcaca  <  2:159598/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                  CTGGCCGCGGCCGTCCCCGGCAATGAGTCCTCGAAGGCCAGCGCTTGCCCGGCCTCGACACCCAGCCGCTGCAGGCCGGTGAGGTAGGGCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACA  >  NC_002947/3522596‑3522890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.