New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3135354	27 (1.160)	6 (0.280)	6/236	NT	18.2%	intergenic (+23/‑37)	PP_2751/PP_2752	hypothetical protein/hypothetical protein
	?	NC_002947	= 3135365	29 (1.340)					intergenic (+34/‑26)	PP_2751/PP_2752	hypothetical protein/hypothetical protein

ACCTTGCGTCCGCTGATCGAGGCCAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAGGCGGCCAATGAACAATTCTTCCCGCTAGCCACCTAC  >  NC_002947/3135245‑3135507                                                                                                                           |                                                                                                                                               accTTGCGTCCGCTGATCGAGGCCAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGTGGCTGTGGAGAAAGACcatgc                                                                                                                   >  2:320883/1‑150 (MQ=255)            gCTGATCGAGGCCAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCCCACGCGACG‑GTGgccgggcgtaggtcataggggtttattgctcgt                                                                                                               <  2:464085‑M2/144‑34 (MQ=255)            gCTGATCGAGGCCAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCCCACGCGACG‑GTGgccgggcgtaggtcataggggtttattgctcgt                                                                                                               >  1:464085‑M2/1‑111 (MQ=255)            gCTGATCGAGGCCAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTg                                                                                                        >  2:445463/1‑150 (MQ=255)                 tCGAGGCCAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACg                                                                                                   >  1:215210/1‑150 (MQ=255)                      gCCAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTa                                                                                              >  2:563565/1‑150 (MQ=255)                       ccAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCGATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTAt                                                                                             >  1:335288/1‑150 (MQ=255)                         aaGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATcg                                                                                           >  1:98963/1‑150 (MQ=255)                            tCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATcgccg                                                                                        >  2:421565/1‑150 (MQ=255)                                           cAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGgcgc                                                                         >  1:417488/1‑150 (MQ=255)                                             ggAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGTGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTc                                                                       <  1:320883/150‑1 (MQ=255)                                                    ggCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCt                                                                >  2:363482/1‑150 (MQ=255)                                                          aCCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTAcgccg                                                          >  2:122950/1‑150 (MQ=255)                                                             ccGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATcgcc                                                                                         <  1:46234/116‑1 (MQ=255)                                                             ccGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATcgcc                                                                                         >  2:46234/1‑116 (MQ=255)                                                              cgcgTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCt                                                      >  1:603718/1‑150 (MQ=255)                                                                     ttGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTg                                               <  1:122950/150‑1 (MQ=255)                                                                            aaCGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGccc                                        >  1:564283/1‑150 (MQ=255)                                                                            aaCGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGccc                                        >  1:564317/1‑150 (MQ=255)                                                                                  cAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAggcgg                                  <  1:445463/150‑1 (MQ=255)                                                                                    aTAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTgg                                                                                                                                <  2:589755/54‑1 (MQ=255)                                                                                    aTAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTgg                                                                                                                                >  1:589755/1‑54 (MQ=255)                                                                                           ccTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGCAACAAAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAGGCGGCCAATGAAc                         >  1:291077/1‑150 (MQ=255)                                                                                            cTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAGGCGGCCAATGAACa                        >  1:516542/1‑150 (MQ=255)                                                                                             tATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAGGCGGCCAATGAACaa                       <  1:421565/150‑1 (MQ=255)                                                                                              aTGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAGGCGGCCAATGAACAAt                      >  1:109489/1‑150 (MQ=255)                                                                                                   cTACGCCCGGCC‑AC‑CGTCGCGTAggccgggcgtaggtcataggggtttattgctcgttggcgcaatcacgcggggtgatgcccttctcctgggcataggcggc                                                                <  2:171325‑M2/103‑81 (MQ=255)                                                                                                   cTACGCCCGGCC‑AC‑CGTCGCGTAggccgggcgtaggtcataggggtttattgctcgttggcgcaatcacgcggggtgatgcccttctcctgggcataggcggc                                                                >  1:171325‑M2/1‑23 (MQ=255)                                                                                                    tACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAGGCGGCCAATGAACAATTCTTcc                <  2:215210/150‑1 (MQ=255)                                                                                                    tACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAGGCGGCCAATGAACAATTCTTcc                <  1:363482/150‑1 (MQ=255)                                                                                                         ccGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAGGCGGCCAATGAACAATTCTTCCCGCTa           >  1:108606/1‑150 (MQ=255)                                                                                                                aC‑CGTCGCGTGggccgggcgtaggtcataggggtttattgctcgttggcgcaatcacgcggggtgatgcccttctcctgggcataggcggcggacttggcctcgatcagcggacgcaaggtggtgcggtcggcctggatccagtcggtca     <  2:190167‑M2/150‑140 (MQ=255)                                                                                                                   cGTCGCGTGggccgggcgtaggtcataggggtttattgctcgttggcgcaatcacgcggggtgatgcccttctcctgggcataggcggcggacttggcctcgatcagcggacgcaaggtggtgcggtcggcctggatccagtcggtcacc   >  1:190167‑M2/1‑9 (MQ=255)                                                                                                                    gTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAGGCGGCCAATGAACAATTCTTCCCGCTAGCCACCTAc  <  2:564283/150‑1 (MQ=255)                                                                                                                    gTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAGGCGGCCAATGAACAATTCTTCCCGCTAGCCACCTAc  <  2:564317/150‑1 (MQ=255)                                                                                                                           |                                                                                                                                               ACCTTGCGTCCGCTGATCGAGGCCAAGTCCGCCGCCTATGCCCAGGAGAAGGGCATCACCCCGCGTGATTGCGCCAACGAGCAATAAACCCCTATGACCTACGCCCGGCC‑AC‑CGTCGCGTGGGCCGGGCGGCTGTGGAGAAAGACCATGCATGCAACCCTGAAACGCAGTATCGCCGCCTTCGGCCTGGCGCTCGCGAGCTACGCCGCGCTGCCGGTGGCGGCCCAGGCGGCCAATGAACAATTCTTCCCGCTAGCCACCTAC  >  NC_002947/3135245‑3135507

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.