New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	143265 =	84 (0.900)	8 (0.090)	5/240	NT	9.0%	coding (213/291 nt)	PP_5428	hypothetical protein
	?	NC_002947	143284 =	82 (0.920)					coding (232/291 nt)	PP_5428	hypothetical protein

GATGAGGAAAGTGATAGCCCAACTCAGCATGGTAGTTCTCCTTTCTTTTTGCGGAATCGATCCGGCCGCCTGGTCAGAAAACCCAGCGCTCCTGGGGAACAACTTTTTCCACAGTGGCCGGTGAGACAATGGCCTGGCCAGCGGGCT‑GCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/143416‑143265 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagGCCATTGTCTCACCGGCCACTGTGGAAAAAGTTGTTCCCCAGGAGCGCTGGGTTTTCTGACCAGGCGGCCGGATCGATTCCGCAAAAAGAAAGGAGAACTACCATGCTGAGTTGGGCTATCACTTTCCT  >  NC_002947/143284‑143412                                                                                                                                                                                                                                                                                            GATGAGGAAAGTGATAGCCCAACTCAGCATGGTAGTTCTCCTTTCTTTTTGCGGAATCGATCCGGCCGCCTGGTCAGAAAACCCAGCGCTCCTGGGGAACAACTTTTTCCACAGTGGCCGGTGAGACAATGGCCTGGCCAGCGGGCT‑GCC                                                                                                                                     >  1:1176471/1‑150                  CCCAACTCAGCATGGTAGTTCTCCTTTCTTTTTGCGGAATCGATCCGGCCGCCTGGTCAGAAAACCCAGCGCTCCTGGGGAACAACTTTTTCCACAGTGGCCGGTGAGACAATGGCCTGG‑CAGCCCGCTGGCCAGGCCAT                                                                                                                              >  1:1122076/1‑140                  CCCAACTCAGCATGGTAGTTCTCCTTTCTTTTTGCGGAATCGATCCGGCCGCCTGGTCAGAAAACCCAGCGCTCCTGGGGAACAACTTTTTCCACAGTGGCCGGTGAGACAATGGCCTGG‑CAGCCCGCTGGCCAGGCCAT                                                                                                                              <  2:1122076/140‑1                                                                GGCCGCCTGGTCAGAAAACCCAGCGCTCCTGGGGAAAAACTTTTTCCACAGTGGCCGGTGAGACAATGGCCTGG‑CAGCCCGCTGGCCAGGCCATT                                                                                                                             >  1:64344/1‑95                                                                GGCCGCCTGGTCAGAAAACCCAGCGCTCCTGGGGAAAAACTTTTTCCACAGTGGCCGGTGAGACAATGGCCTGG‑CAGCCCGCTGGCCAGGCCATT                                                                                                                             <  2:64344/95‑1                                                                                                               ACAGTGGCCGGTGAGACAATGGCCTGGCCAGCGGGCT‑GCCAG‑‑‑‑‑‑‑‑‑TCAGCGGCCACTGTGGAAAAAGTTGTTCCCCAGGAGCGCTGGGTTTTCTGACCAGGCGGCCGGATCGATTCCGCAAAAAGAAAGGAGAACTACCATGCTGAGTTGGGC              >  1:234383/1‑150                                                                                                               ACAGTGGCCGGTGAGACAATGGCCTGGCCAGCGGGCT‑GCCAG‑‑‑‑‑‑‑‑‑TCAGCGGCCACTGTGGAAAAAGTTGTTCCCCAGGAGCGCTGGGTTTTCTGACCAGGCGGCCGGATCGATTCCGCAAA                                             >  1:1400132/1‑119                                                                                                               ACAGTGGCCGGTGAGACAATGGCCTGGCCAGCGGGCT‑GCCAG‑‑‑‑‑‑‑‑‑TCAGCGGCCACTGTGGAAAAAGTTGTTCCCCAGGAGCGCTGGGTTTTCTGACCAGGCGGCCGGATCGATTCCGCAAA                                             <  2:1400132/119‑1                                                                                                                 AGTGGCCGGTGAGACAATGGCCTGGCCAGCGGGCT‑GCCAG‑‑‑‑‑‑‑‑‑TCAGCGGCCACTGTGGAAAAAGTTGTTCCCCAGGAGCGCTGGGTTTTCTGACCAGGCGGCCGGATCGATTCCGCAAAAAGAAAGGAGAACTACCATGCTGAGTTGGGCTA            >  1:1386265/1‑150                                                                                                                   TGGCCGGTGAGACAATGGCCTGGCCAGCGGGCT‑GCCAG‑‑‑‑‑‑‑‑‑TCAGCGGCCACTGTGGAAAAAGTTGTTCCCCAGGAGCGCTGGGTTTTCTGACCAGGCGGCCGGATCGATTCCGCAAAAAGAAAGGAGAACTACCATGCTGAGTTGGGCTATC          <  2:234383/150‑1                                                                                                                                    GCCTGGCCAGCGGGCT‑GCCAGGCCATTGTCTCACCGGCCACTGTGGAAAAAGTTGTTCCCCAGGAGCGCTGGGTTTTCTGACCAGGCGGCCGGATCGATTCCGCAAAAAGAAAGGAGAACTACCATGCTGAGTTGGGCTATCACTTTCCT  >  1:1491003/1‑150                                                                                                                                                                                                                                                                                            GATGAGGAAAGTGATAGCCCAACTCAGCATGGTAGTTCTCCTTTCTTTTTGCGGAATCGATCCGGCCGCCTGGTCAGAAAACCCAGCGCTCCTGGGGAACAACTTTTTCCACAGTGGCCGGTGAGACAATGGCCTGGCCAGCGGGCT‑GCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/143416‑143265 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagGCCATTGTCTCACCGGCCACTGTGGAAAAAGTTGTTCCCCAGGAGCGCTGGGTTTTCTGACCAGGCGGCCGGATCGATTCCGCAAAAAGAAAGGAGAACTACCATGCTGAGTTGGGCTATCACTTTCCT  >  NC_002947/143284‑143412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.