Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC	NC_002947	217,493	Δ4 bp	5.5%	coding (22999‑23002/26049 nt)	PP_0168 →	putative surface adhesion protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 217492	104 (1.110)	6 (0.060)	6/250	NT	5.5%	coding (22998/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	217497 =	104 (1.110)					coding (23003/26049 nt)	PP_0168	putative surface adhesion protein

CCAAAACGGTGATGACTTCACCGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/217354‑217492 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCG  >  NC_002947/217497‑217604                                                                                                                                                                                                                                                         CCAAAACGGTGATGACTTCACCGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCGTGGTAACTTC                                                                                                   >  2:2369661/1‑150                                          TTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGAC                                                          <  1:1280585/150‑1                                                                                        CGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCG            >  1:2365804/1‑150                                                                                            AAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGA                                              <  1:577619/112‑1                                                                                            AAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGA                                              >  2:577619/1‑112                                                                                                  GTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCG  <  1:2369661/150‑1                                                                                                                                                                                                                                                         CCAAAACGGTGATGACTTCACCGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/217354‑217492 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCG  >  NC_002947/217497‑217604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.