Predicted mutation
evidence seq id position mutation freq annotation gene description
JC NC_002947 217,493 Δ4 bp 5.5% coding (22999‑23002/26049 nt) PP_0168 → putative surface adhesion protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 217492104 (1.110)6 (0.060) 6/250 NT 5.5% coding (22998/26049 nt) PP_0168 putative surface adhesion protein
?NC_002947 217497 = 104 (1.110)coding (23003/26049 nt) PP_0168 putative surface adhesion protein

Only 100 of 113 total aligned reads displayed.

ACCGCCCAAAACGGTGATGACTTCACCGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGATTACGTGTTTGCCTGGAGTGAT  >  NC_002947/217349‑217639
                                                                                                                                               |                                                                                                                                                   
aCCGCCCAAAACGGTGATGACTTCACCGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGggt                                                                                                                                               <  2:2095481/150‑1 (MQ=255)
  cGCCCAAAACGGTGATGACTTCACCGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGggtgg                                                                                                                                             <  2:1002571/150‑1 (MQ=255)
   gCCCAAAACGGTGATGACTTCACCGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGggtggt                                                                                                                                            >  2:223144/1‑150 (MQ=255)
     ccAAAACGGTGATGACTTCACCGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAGCCGCCACGGGAGGTaa                                                                                                                                          >  2:1216320/1‑150 (MQ=255)
     ccAAAACGGTGATGACTTCACCGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCgtggtaacttc                                                                                                                                          >  2:2369661‑M1/1‑139 (MQ=255)
     ccAAAACGGTGATGACTTCACCGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTaa                                                                                                                                          >  1:1181004/1‑150 (MQ=255)
      cAAAACGGTGATGACTTCACCGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGCCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAAc                                                                                                                                         <  1:1877619/150‑1 (MQ=255)
              tgatgaCTTCACCGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTACAACATCGCTACCCTCCACGACAAACAGGTGGAAGGTACCGAGAACTTCGTCGGGAAGATCGCAACAGCTTCGAGTGGTAACATCGCGaa                                                                                                                                 >  2:1033808/1‑150 (MQ=255)
               gatgaCTTCACCGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAAc                                                                                                                                <  2:1181004/150‑1 (MQ=255)
                 tgaCTTCACCGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGACGATCGAAACCGCCACGGGTGGTCACTTCgaggccgc                                                                                                                              >  2:812282/1‑145 (MQ=255)
                 tgaCTTCACCGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCt                                                                                                                              >  1:66459/1‑150 (MQ=255)
                  gaCTTCACCGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCga                                                                                                                                    <  2:559961/143‑1 (MQ=255)
                  gaCTTCACCGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCga                                                                                                                                    >  1:559961/1‑143 (MQ=255)
                    cTTCACCGGTGTTGCGACCGTGAAGATACCCGACAAAAGTTCAGGCACTACGTTCAACATCGCTACCCTCCACTACTAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCa                                                                                                                           <  1:1114854/150‑1 (MQ=255)
                     ttCACCGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAg                                                                                                                          <  1:998281/150‑1 (MQ=255)
                        aCCGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACACAATAGTAATACTGACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTc                                                                                                                       >  2:191204/1‑150 (MQ=255)
                          cGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGGCGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCCAAACCGCCCCGGGTGGTCGCTTGGTGGACCTCCCGGTCGa                                                                                                                     >  2:176727/1‑150 (MQ=255)
                            gtgtTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTc                                                                                                                                      >  2:698317/1‑131 (MQ=255)
                            gtgtTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTc                                                                                                                                      <  1:698317/131‑1 (MQ=255)
                                tGCCACCGTGAAGATTCCTGCCAACAGCACAGGCACGACGGTCAACAACGCTCCCCTCAACGAAAACCGGGTCGAAGGGACCGAGAAATTCGTCGTGCAGCTCGACACCGCCACGGGTGGTAACTCCGAGAACCTGCAGGTCGATagcag                                                                                                               <  2:1394801/150‑1 (MQ=255)
                                   gACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCaa                                                                                                            >  1:1718255/1‑150 (MQ=255)
                                   gACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCaa                                                                                                            >  1:1944950/1‑150 (MQ=255)
                                        tGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGa                                                                                                       <  1:1850812/150‑1 (MQ=255)
                                        tGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAACGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCt                                                                                                                              >  2:1376401/1‑127 (MQ=255)
                                         gAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGt                                                                                                                        <  1:528365/132‑1 (MQ=255)
                                         gAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGt                                                                                                                        >  2:528365/1‑132 (MQ=255)
                                              ttCNGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTga                                                                                                 >  2:1511373/1‑150 (MQ=255)
                                              ttCCGGCCAACAGCACAGGTACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTAGTCACAAAGAGCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTga                                                                                                 >  1:746806/1‑150 (MQ=255)
                                              ttCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCgtggtaacttcgagaacctgcaggtcgatagcagcaaatcgagcgtgacgac                                                                                                 <  1:1280585‑M1/150‑53 (MQ=255)
                                                 cGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCgag                                                                                                                                   >  2:2214958/1‑113 (MQ=255)
                                                 cGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCgag                                                                                                                                   <  1:2214958/113‑1 (MQ=255)
                                                  ggCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACt                                                                                                                                        >  2:27902/1‑107 (MQ=255)
                                                  ggCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGa                                                                                                       >  1:1799180/1‑140 (MQ=255)
                                                  ggCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGa                                                                                                       <  2:1799180/140‑1 (MQ=255)
                                                  ggCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTgacgac                                                                                             <  1:1734195/150‑1 (MQ=255)
                                                      aaCAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGGCGATAGCAGCAAATCGGGTGTGGCGaccacc                                                                                         <  2:454841/150‑1 (MQ=255)
                                                       aCAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGAccacca                                                                                        >  1:1079532/1‑150 (MQ=255)
                                                         aGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCAtt                                                                                      >  2:1691177/1‑150 (MQ=255)
                                                          gCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATtc                                                                                     >  2:586468/1‑150 (MQ=255)
                                                            acaGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATtctc                                                                                   <  2:1079532/150‑1 (MQ=255)
                                                                 cACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACaa                                                                              <  2:1944950/150‑1 (MQ=255)
                                                                    gacgTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGa                                                                           <  2:66459/150‑1 (MQ=255)
                                                                       gTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGacca                                                                        >  2:30948/1‑150 (MQ=255)
                                                                           aaCATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCTGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTg                                                                    >  2:1472928/1‑150 (MQ=255)
                                                                           aaCATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAg                                                                                                      >  1:1544040/1‑116 (MQ=255)
                                                                           aaCATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGaccac                                                                       >  1:1139593/1‑147 (MQ=255)
                                                                            aCATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGc                                                                   >  1:226732/1‑150 (MQ=255)
                                                                                   tACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGCTAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTc                                                            >  2:453748/1‑150 (MQ=255)
                                                                                    aCCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGa                                                                                 <  2:1931302/128‑1 (MQ=255)
                                                                                    aCCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGa                                                                                 >  1:1931302/1‑128 (MQ=255)
                                                                                     cccTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGATTTCGc                                                          <  2:2130129/150‑1 (MQ=255)
                                                                                      ccTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGcc                                                         >  1:1658898/1‑150 (MQ=255)
                                                                                       cTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCt                                                        <  1:586468/150‑1 (MQ=255)
                                                                                        tCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTg                                                       >  1:1498068/1‑150 (MQ=255)
                                                                                        tCAAAGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCAAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTg                                                       >  2:1805725/1‑150 (MQ=255)
                                                                                            cGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCgtggtaacttcgagaacctgcaggtcgatagcagcaaatcgagcgtgacgaccaccattctcgacaatgaccacctgccggtttcgcctggcggcgcg                                                   >  1:2365804‑M1/1‑52 (MQ=255)
                                                                                             gACAAACTGGTCGAAGGTACCGCGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTggcggc                                                  >  1:2156878/1‑150 (MQ=255)
                                                                                                aaaCTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCgtggtaacttcgagaacctgcaggtcgatagcagcaaatcgagcgtgacgaccaccattctcga                                                                                     <  1:577619‑M1/112‑65 (MQ=255)
                                                                                                aaaCTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCgtggtaacttcgagaacctgcaggtcgatagcagcaaatcgagcgtgacgaccaccattctcga                                                                                     >  2:577619‑M1/1‑48 (MQ=255)
                                                                                                 aaCTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCga                                                                                                                                    <  1:1603977/64‑1 (MQ=255)
                                                                                                 aaCTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCga                                                                                                                                    >  2:1603977/1‑64 (MQ=255)
                                                                                                      gTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCgtggtaacttcgagaacctgcaggtcgatagcagcaaatcgagcgtgacgaccaccattctcgacaatgaccacctgccggtttcgcctggcggcgcggtatttggcg                                         <  1:2369661‑M1/150‑109 (MQ=255)
                                                                                                       tCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTg                                        <  1:12753/150‑1 (MQ=255)
                                                                                                            ggTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGtt                                   <  1:2079558/150‑1 (MQ=255)
                                                                                                              tACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGa                                 <  2:1658898/150‑1 (MQ=255)
                                                                                                              tACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGa                                 <  1:223144/150‑1 (MQ=255)
                                                                                                               agcGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAg                                <  1:112936/148‑1 (MQ=255)
                                                                                                               aCCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAg                                <  1:297724/150‑1 (MQ=255)
                                                                                                               aCCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAg                                <  1:1511373/150‑1 (MQ=255)
                                                                                                               aCCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACGTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGCCCTCCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAg                                <  2:860799/150‑1 (MQ=255)
                                                                                                                 cGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTc                                                            >  1:933452/1‑120 (MQ=255)
                                                                                                                       cTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGa                        >  1:248976/1‑150 (MQ=255)
                                                                                                                       cTTCGGCGTTAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGa                        <  1:1216320/150‑1 (MQ=255)
                                                                                                                        ttCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGa                              >  2:2093662/1‑143 (MQ=255)
                                                                                                                        ttCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGa                              <  1:2093662/143‑1 (MQ=255)
                                                                                                                        ttCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGAt                       >  2:2257110/1‑150 (MQ=255)
                                                                                                                            tcgtGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGATTACg                   >  2:1262272/1‑150 (MQ=255)
                                                                                                                              gtGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGATTa                     >  2:2209545/1‑146 (MQ=255)
                                                                                                                               tGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCACTCTCGACAATGACCACCTGCCGGTTTCGCCAGGCGGCGCGGTATTTGGCGTTGAGGACACCGATTACgtgt                <  1:1831540/150‑1 (MQ=255)
                                                                                                                                 aaGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGATTACGTGttt              <  1:2257110/150‑1 (MQ=255)
                                                                                                                                 aaGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGATTACGTGttt              >  2:476173/1‑150 (MQ=255)
                                                                                                                                   gATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGATTACGTGTTTGc            <  1:2326261/150‑1 (MQ=255)
                                                                                                                                   gATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGATTACGTGTTTGc            <  2:746806/150‑1 (MQ=255)
                                                                                                                                    aTCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGAc                                                                                <  1:902132/81‑1 (MQ=255)
                                                                                                                                    aTCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGAc                                                                                >  2:902132/1‑81 (MQ=255)
                                                                                                                                    aTCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGATTACGTGTTTGcc           >  1:1739256/1‑150 (MQ=255)
                                                                                                                                     tCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGc                                      >  2:1566324/1‑122 (MQ=255)
                                                                                                                                     tCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGc                                      <  1:1566324/122‑1 (MQ=255)
                                                                                                                                     tCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGATTACGTGTTTNCCt          <  2:1509714/150‑1 (MQ=255)
                                                                                                                                     tCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGATTACGTGTTTGCCt          >  1:1848629/1‑150 (MQ=255)
                                                                                                                                        aaaCCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGATTACGTGTTTGCCTGGa       <  2:1906290/150‑1 (MQ=255)
                                                                                                                                        aaaCCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGATTACGTGTTTGCCTGGa       <  1:191204/150‑1 (MQ=255)
                                                                                                                                        aaaCCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGATTACGTGTTTGCCTGGa       <  1:552968/150‑1 (MQ=255)
                                                                                                                                        aaaCCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGATTACGTGTTTGCCTGGa       >  2:908920/1‑150 (MQ=255)
                                                                                                                                         aaCCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGc                                                                                                     >  1:2145096/1‑55 (MQ=255)
                                                                                                                                          aCCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGc                                      <  2:1595919/117‑1 (MQ=255)
                                                                                                                                          aCCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGc                                      >  1:1595919/1‑117 (MQ=255)
                                                                                                                                            cGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGATTACGTGTTTGCCTGGAGTGa   >  1:1552935/1‑150 (MQ=255)
                                                                                                                                             gCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGATTACGTGTTTGCCTGGAGTGAt  <  2:2186851/150‑1 (MQ=255)
                                                                                                                                             gCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGATTACGTGTTTGCCTGGAGTGAt  <  2:2156878/150‑1 (MQ=255)
                                                                                                                                               |                                                                                                                                                   
ACCGCCCAAAACGGTGATGACTTCACCGGTGTTGCGACCGTGAAGATTCCGGCCAACAGCACAGGCACGACGTTCAACATCGCTACCCTCAACGACAAACTGGTCGAAGGTACCGAGAACTTCGTCGTGAAGATCGAAACCGCCACGGGTGGTAACTTCGAGAACCTGCAGGTCGATAGCAGCAAATCGAGCGTGACGACCACCATTCTCGACAATGACCACCTGCCGGTTTCGCCTGGCGGCGCGGTATTTGGCGTTGAGGACACCGATTACGTGTTTGCCTGGAGTGAT  >  NC_002947/217349‑217639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.