New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	317421 =	94 (1.010)	5 (0.060)	5/236	NT	5.5%	coding (512/1407 nt)	dctD‑I	C4‑dicarboxylate transport transcriptional regulator
	?	NC_002947	317465 =	84 (0.950)					coding (468/1407 nt)	dctD‑I	C4‑dicarboxylate transport transcriptional regulator

CGACAGCGTGCGCCGCGCCCTGGCTTTGCGCCGGCTGGTGCTGGACAACCGTAGCCTGCGTCTGGCACTGAGCGACCGCCAGCAACTGGCAACCCGCCTGGTCGGCCATTCACCGGCCATGCTGCGCCTGCGCGAGCAGATCGGCGCTTTGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/317576‑317421 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccggTGAATG‑GCCGACCAGGCGGGTTGCCAGTTGCTGGCGGTCGCTCAGTGCCAGACGCAGGCTACGGTTGTCCAGCACCAGCCGGCGCAAAGCCAGGGCGCGGCGCACGCTGTCGAGCAGGGCGTCTGTGGCAAAGGGTTTTTCCAGGAAGT  >  NC_002947/317465‑317613                                                                                                                                                                                                                                                                                                                    CGACAGCGTGCGCCGCGCCCTGGCTTTGCGCCGGCTGGTGCTGGACAACCGTAGCCTGCGTCTGGCACTGAGCGACCGCCAGCAACTGGCAACCCGCCTGGTCGGCCATTCACCGGCCATGCTGCGCCTGCGCGAGCAGATCGGCGCTTT                                                                                                                                                              >  2:1050526/1‑150   ACAGCGTGCGCCGCGCCCTGGCTTTGCGCCGGCTGGTGCTGGACAACCGTAGCCTGCGTCTGGCACTGAGCGACCGCCAGCAACTGGCAACCCGCCTGGTCGGCCATTCACCGGCCATGCTGCGCCTGCGCGAGCAGATCGGCGCTTTGG                                                                                                                                                            <  1:820670/150‑1    CAGCGTGCGCCGCGCCCTGGCTTTGCGCCGGCTGGTGCTGGACAACCGTAGCCTGCGTCTGGCACTGAGCGACCGCCAGCAACTGGCAACCCGCCTGGTCGGCCATTCACCGGCCATGCTGCGCCTGCGCGAGCAGATCGGCGCTTTGGC                                                                                                                                                           <  2:536407/150‑1     AGCGTGCGCCGCGCCCTGGCTTTGCGCCGGCTGGTGCTGGACAACCGTAGCCTGCGTCTGGCACTGAGCGACCGCCAGCAACTGGCAACCCGCCTGGTCGGCCATTCACCGGCCATGCTGCGCCTGCGCGAGCAGATCGGCGCTTTGGCC                                                                                                                                                          >  1:722916/1‑150                   CCTGGCTTTGCGCCGGCTGGTGCTGGACAACCGTAGCCTGCGTCTGGCACTGAGCGACCGCCAGCAACTGGCAACCCGCCTGGTCGGCCATTCACCGGCCATGCTGCGCCTGCGCGAGCAGATCGGCGCTTTGGCCG                                                                                                                                                         <  1:1160853/137‑1                   CCTGGCTTTGCGCCGGCTGGTGCTGGACAACCGTAGCCTGCGTCTGGCACTGAGCGACCGCCAGCAACTGGCAACCCGCCTGGTCGGCCATTCACCGGCCATGCTGCGCCTGCGCGAGCAGATCGGCGCTTTGGCCG                                                                                                                                                         >  2:1160853/1‑137                                                                                                GCCTGGTCGGCCATTCACCGGCCATGCTGCGCCTGCGCGAGCAGATCGGCGCTTTGGCCGGCACCCGCGCCGACCAGGCGGGTTGCCAGTTGCTGGCGGTCGCTCAGTGCCAGACGCAGGCTACGGTTGTCCAGCACCAGCCGGCGCAAA                                                               >  2:850110/1‑150                                                                                                          CCATTCACCGGCCATGCTGCGCCTGCGCGAGCAGATCGGCGCTTTGGCCGGTGAATG‑GCCGACCAGGCGGGTTGCCAGTTGCTGGCGGTCGCTCAGTGCCAGACGCAGGCTACGGTTGTCCAGCACCAGCCGGCGCAAAGCCAGGGCGCG                                                    >  1:952321/1‑150                                                                                                                  CGGCCATGCTGCGCCTGCGCGAGCAGATCGGCGCTTTGGCCGGTGAATG‑GCCGACCAGGCGGGTTGCCAGTTGCTGGCGGTCGCTCAGTGCCAGACGCAGGCTACGGTTGTCCAGCACCAGCCGGCGCAAAGCCAGGGCGCGGC                                                  <  2:821961/144‑1                                                                                                                  CGGCCATGCTGCGCCTGCGCGAGCAGATCGGCGCTTTGGCCGGTGAATG‑GCCGACCAGGCGGGTTGCCAGTTGCTGGCGGTCGCTCAGTGCCAGACGCAGGCTACGGTTGTCCAGCACCAGCCGGCGCAAAGCCAGGGCGCGGC                                                  >  1:821961/1‑144                                                                                                                    GCCATGCTGCGCCTGCGCGAGCAGAAAGCTACTTTGGCCGGTGAATG‑GCCGACCAGGCGGGTTGCCAGTTGCTGGCGGTCGCTCAGTGCCAGACGCAGGCTACGGTTGTCCAGCACCAGCCGGCGCAAAGCCAGGGCGCGGCGCACGCTG                                          >  1:1243877/1‑150                                                                                                                                                      TGGCCGGTGAATG‑TCCGACCAGGCGGGTTGCCAGTTGCTGGCGGTCGCTCAGTGCCAGACGCAGGCTACGGTTGTCCAGCACCAGCCGGCGCAAAGCCAGGGCGCGGCGCACGCTGTCGAGCAGGGCGTCTGTGGCAAAGGGTTTTTCCA        <  2:1293489/150‑1                                                                                                                                                      TGGCCGGTGAATG‑GCCGACCAGGCGGGTTGCCAGTTGCTGGCGGTCGCTCAGTGCCAGACGCAGGCTACGGTTGTCCAGCACCAGCCGGCGCAAAGCCAGGGCGCGGCGCACGCTGTCGAGCAGGGCGTCTGTGGCAAAGGGTTTTTCCA        <  2:582718/150‑1                                                                                                                                                      TGGCCGGTGAATG‑GCCGACCAGGCGGGTTGCCAGTTGCTGGCGGTCGCTCAGTGCCAGACGCAGGCTACGGTTGTCCAGCACCAGCCGGCGCAAAGCATGGGCGCGGCGCACGCTGTCGAGCAGGGCGTCTGTGGCAAAGGGTTTTTCCA        <  1:61379/150‑1                                                                                                                                                       GGCCGGTGAATG‑GCCGACCAGGCGGGTTGCCAGTTGCTGGCGGTCGCTCAGTGCCAGACGCAGGCTACGGTTGTCCAGCACCAGCCGGCGCAAAGCCAGGGCGCGGCGCACGCTGTCGAGCAGGGCGTCTGTGGCAAAGGGTTTTTCCAG       <  2:899052/150‑1                                                                                                                                                        GCCGGTGAATG‑GCCGACCAGGCGGGTTGCCAGTTGCTGGCGGTCGCTCAGTGCCAGACGCAGG                                                                                             >  2:2160544/1‑63                                                                                                                                                        GCCGGTGAATG‑GCCGACCAGGCGGGTTGCCAGTTGCTGGCGGTCGCTCAGTGCCAGACGCAGG                                                                                             <  1:2160544/63‑1                                                                                                                                                         CCGGTGAATG‑GCCGACCAGGCGGGTTGCCAGTTGCTGGCGGTCGCTCAGTGCCAGACGCAGGCTACGGTTGTCCAGCACCAGCCGGCGCAAAGCCAGGGCGCGGCGCACGCTGTCGAGCAGGGCGTCTGTGGCAAAGGGTTTTTCCAGGA     >  2:1746531/1‑150                                                                                                                                                           GGTGAATG‑GCCGACCAGGCGGGTTGCCAGTTGCTGGCGGTCGCTCAGTGCCAGACGCAGGCTACGGTTGTCCAGCACCAGCCGGCGCAAAGCCAGGGCGCGGCGCACGCTGTCGAGCAGGGCGTCTGTGGCAAAGGGTTT             <  2:1162582/140‑1                                                                                                                                                           GGTGAATG‑GCCGACCAGGCGGGTTGCCAGTTGCTGGCGGTCGCTCAGTGCCAGACGCAGGCTACGGTTGTCCAGCACCAGCCGGCGCAAAGCCAGGGCGCGGCGCACGCTGTCGAGCAGGGCGTCTGTGGCAAAGGGTTT             >  1:1162582/1‑140                                                                                                                                                            GTGAATG‑GCCGACCAGGCGGGTTGCCAGTTGCTGGCGGTCGCTCAGTGCCAGACGCAGGCTACGGTTGTCCAGCACCAGCCGGCGCAAAGCCAGGGCGCGGCGCACGCTGTCGAGCAGGGCGTCTGTGGCAAAGGGTTTTTCCAGGAAGT  <  1:732220/150‑1                                                                                                                                                                                                                                                                                                                    CGACAGCGTGCGCCGCGCCCTGGCTTTGCGCCGGCTGGTGCTGGACAACCGTAGCCTGCGTCTGGCACTGAGCGACCGCCAGCAACTGGCAACCCGCCTGGTCGGCCATTCACCGGCCATGCTGCGCCTGCGCGAGCAGATCGGCGCTTTGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/317576‑317421 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccggTGAATG‑GCCGACCAGGCGGGTTGCCAGTTGCTGGCGGTCGCTCAGTGCCAGACGCAGGCTACGGTTGTCCAGCACCAGCCGGCGCAAAGCCAGGGCGCGGCGCACGCTGTCGAGCAGGGCGTCTGTGGCAAAGGGTTTTTCCAGGAAGT  >  NC_002947/317465‑317613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.