| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1156311 = | 57 (0.610) | 16 (0.200) | 10/218 | NT | 25.3% | intergenic (+8/‑208) | PP_1013/yihS | sensor histidine kinase/aldose‑ketose isomerase |
| ? | NC_002947 | 1156418 = | 45 (0.550) | intergenic (+115/‑101) | PP_1013/yihS | sensor histidine kinase/aldose‑ketose isomerase | |||||
GGGTCATGGCGGATGTCACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCA‑CCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1156473‑1156311‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcacaggca‑cccAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCC > NC_002947/1156418‑1156566 cgatctTGGCGGATGTCACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAGCCAGTTCCTACGACGCAACTGAGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCC < 2:82233/144‑1 GGTCATGGCGGATGTCACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCC < 1:2116485/150‑1 ACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGC < 1:1305260/90‑1 ACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGC > 2:1305260/1‑90 CCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAA > 2:335282/1‑150 CCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCTCAA > 2:1480557/1‑150 GCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAA > 1:1926532/1‑150 TCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTC < 1:2452462/101‑1 TCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTC > 2:2452462/1‑101 CTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGC > 1:446120/1‑55 CTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGC < 2:446120/55‑1 TACGACGCAAACCTGACTCGGTCGTTGTGGGGGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTG > 1:1881245/1‑150 TACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCac < 2:595565/95‑3 TACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTG > 1:1055279/1‑150 TACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTG > 2:1926760/1‑150 TACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCC > 1:1728258/1‑95 TACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCC < 2:1728258/95‑1 TACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCC > 1:595565/1‑95 ACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCTCAAACGACTGGCAAGGATCAAGCTG < 1:1480557/150‑1 GGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCA‑CCCAAAATGTGGTACGCCTCGCACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCC < 2:1881245/150‑1 GCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGG > 1:635244/1‑150 GCCCGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGG > 2:55004/1‑150 CGCACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTC > 2:2052903/1‑150 ACAGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCGATGACCCCGCTGGCTAGAATTCGCAAACGACTGACCGGGAGCTTGCTGTCCCATGAGCCGCCTCAACCTGTATGTGAACAGTTGGCTCAAT > 2:1242780/1‑150 AGGCA‑CCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGC < 1:55004/150‑1 CCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGC > 1:521242/1‑150 CAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCC > 2:1603389/1‑150 CAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCC > 1:691644/1‑150 CAAAATGGCACGGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCC > 2:1603276/1‑150 GGGTCATGGCGGATGTCACGAAGGACGACGGGATTGTCACCGGGCAGTGACATTTTGGGTGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGCAAACCTGACTCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCA‑CCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1156473‑1156311‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcacaggca‑cccAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAACAGTTGGCTCAATGCCCCGGCC > NC_002947/1156418‑1156566 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |