| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1202705 | 83 (0.890) | 5 (0.060) | 5/242 | NT | 5.6% | coding (528/1089 nt) | xcpY | type II secretion pathway protein XcpY |
| ? | NC_002947 | = 1202731 | 87 (0.960) | coding (554/1089 nt) | xcpY | type II secretion pathway protein XcpY | |||||
GGCTTGCAGACGGTACGTTGCTGGGCGGAGCTGCAGCTGCTGCCATCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTACAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1202553‑1202705‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccCACGGTGGCTGCGGCACGCCACCCAAGGCATCAGGCCACGCCAGCCAGTGCTCCTGTCCATCTTCGGCCAAGCCTTTGTAGAGCGACATGCCGGGGGTGCGTTGCCATTGCCAGGCGCATCCTGGCTCGGGTGATGGCAGCAGCTGCAG < NC_002947/1202731‑1202583 GGCTTGCAGACGGTACGTTGCTGGGCGGAGCTGCAGCTGCTGCCATCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTACAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGAT < 1:865286/150‑1GGCTTGCAGACGGTACGTTGCTGGGCGGAGCTGCAGCTGCTGCCATCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTACAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGAT < 2:2045099/150‑1GGCTTGCAGACGGTACGTTGCTGGGCGGAGCTGCAGCTGCTGCCATCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTACAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGAT < 2:433341/150‑1GGCTTGCAGACGGTACGTGGCTGGGCGGAGCTGCAGCTGCTGCCATCACCCGAGCCAGGATGCGCCTGTCAAGTGCAACGCACCCCCGGCATGTCGCTCTACAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGAT < 1:42469/150‑1 GCTTGCAGACGGTACGTTGCTGGGCGGAGCTGCAGCTGCTGCCATCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTACAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATG > 2:1427395/1‑150 GCTTGCAGACGGTACGTTGCTGGGCGGAGCTGCAGCTGCTGCCATCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTACAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATG > 2:468060/1‑150 CGGAGCTGCAGCTGCTGCCATCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTACAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGGTGGCTGCGGCACGCCAC < 1:779914/150‑1 GCTGCAGCTGCTGCCATCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTACAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGGTGGCTGCGGCACGCCACCCAA < 1:1248999/150‑1 CTGCTGCCATCACCCGGGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTACAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCCACGGTGGCTGCGGCACGCCACCCAAGGCATCA < 2:19595/150‑1 CCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTACAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCCACGGTGGCTGCGGCACGCCACCCAAGGCAT > 1:526836/1‑135 CCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTACAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCCACGGTGGCTGCGGCACGCCACCCAAGGCAT < 2:526836/135‑1 CCACGGTGGCTGCGGCACGCCACCCAAGGCATCAGGCCACGCCAGCCAGTGCTCCTGTCCATCTTCGGCCAAGCCTTTGTAGAGCGACATGCCGGGGGTGCGTTGCCATTGCCAGGCGCATCCTGGCTCGGGTGATGGCAGCAGCTGCAG > 2:329259/1‑150 GGCTTGCAGACGGTACGTTGCTGGGCGGAGCTGCAGCTGCTGCCATCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTACAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1202553‑1202705‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccCACGGTGGCTGCGGCACGCCACCCAAGGCATCAGGCCACGCCAGCCAGTGCTCCTGTCCATCTTCGGCCAAGCCTTTGTAGAGCGACATGCCGGGGGTGCGTTGCCATTGCCAGGCGCATCCTGGCTCGGGTGATGGCAGCAGCTGCAG < NC_002947/1202731‑1202583 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |