| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1754893 = | 136 (1.460) | 7 (0.080) | 6/248 | NT | 5.3% | coding (260/342 nt) | PP_1557 | hypothetical protein |
| ? | NC_002947 | 1754919 = | 114 (1.230) | coding (286/342 nt) | PP_1557 | hypothetical protein | |||||
CCTAGTCCCCGGTGTGGTTGGTGCCGCCGGCGCCGCGCCGGTTGCTTCCCTGATATGTAGCCTCAGGC‑‑CCGGATGCCTGAGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1754976‑1754893‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACATATCAGGGAAGCAACCGGCGCGGCGCCGGCGGCACCAACCACACCGGGGACTAGGGGGAAGGACATGAGCAACGTAGAGAAGTCGGCTGAATACCTGCTGGAGCACTGGGGTCGTTGGGTTGT > NC_002947/1754919‑1755044 CCTAGTCCCCGGTGTGGTTGGTGCCGCCGGCGCCGCGCCGGTTGCTTCCCTGATATGTACCCTCAGGCATCCGG‑‑GCCTGAGGCTACATATCAGGGAA < 1:360104/97‑1CCTAGTCCCCGGTGTGGTTGGTGCCGCCGGCGCCGCGCCGGTTGCTTCCCTGATATGTACCCTCAGGCATCCGG‑‑GCCTGAGGCTACATATCAGGGAA > 2:360104/1‑97 AGCCTCAGGC‑‑CCGGATGCCTGAGGGTACATATCAGGGAAGCAACCGGCGCGGCGCCGGCGGCACCAACCACACCGGG < 1:1862315/77‑1 AGCCTCAGGC‑‑CCGGATGCCTGAGGGTACATATCAGGGAAGCAACCGGCGCGGCGCCGGCGGCACCAACCACACCGGG > 2:1862315/1‑77 CCTCAGGC‑‑CCGGATGCCTGAGGGTACATATCAGGGAAGCAACCGGCGCGGCGCCGGCGGCACCAACCACACCGGGGACTCGGGGGAAGGACATGAGCAACGTAGAGAAGTCGGCTGAATACCTGCTGGCGCACTGGGGTCGTTGGGTTGT > 2:774357/1‑150 CCTCAGGC‑‑CCGGATGCCTGAGGCTACATATCAGGGAAGCAACCGGCGCGGCGCCGGCGGCACCAACCACAC < 1:5749/71‑1 CCTCAGGC‑‑CCGGATGCCTGAGGCTACATATCAGGGAAGCAACCGGCGCGGCGCCGGCGGCACCAACCACAC > 2:5749/1‑71 CCTAGTCCCCGGTGTGGTTGGTGCCGCCGGCGCCGCGCCGGTTGCTTCCCTGATATGTAGCCTCAGGC‑‑CCGGATGCCTGAGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1754976‑1754893‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACATATCAGGGAAGCAACCGGCGCGGCGCCGGCGGCACCAACCACACCGGGGACTAGGGGGAAGGACATGAGCAACGTAGAGAAGTCGGCTGAATACCTGCTGGAGCACTGGGGTCGTTGGGTTGT > NC_002947/1754919‑1755044 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |