New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2626249 =	72 (0.770)	5 (0.060)	5/232	NT	7.3%	intergenic (+9/‑141)	PP_t40/PP_2298	tRNA‑His/hypothetical protein
	?	NC_002947	2626282 =	61 (0.700)					intergenic (+42/‑108)	PP_t40/PP_2298	tRNA‑His/hypothetical protein

CGGGCCGGTGTTTCAACCGGCTGAAATCTAACAGCTTTTATTGGGGTGCCACCAGTGGATTACAAGGGGCAGGAGGTGTTTTGGCTGGGGCGCGGCTCATCACCGCTACGCAGACCCAAAACAAAAAGGCGCCCGATCTCACGATCAAGGCGCCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2626405‑2626249 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcctttTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGCCGGTTGAAACACCGGCCCGTTTGGCCGGCAAAGGACACCACGA  >  NC_002947/2626282‑2626429                                                                                                                                                                                                                                                                                                                   CGGGCCGGTGTTTCAACCGGCTGAAATCTAACAGCTTTTATTGGGGTGCCACCAGTGGATTACAAGGGGCAGGAGGTGTTTTGGCTGGGGCGCGGCTCATCACCGCTACGCAGACCCAAAACAAAAAGGCGCCCGATCTCACGATCAAGG                                                                                                                                                             <  1:241304/150‑1  GGGCCGGTGTTTCAACCGGCTGAAATCTAACAGCTTTTATTGGGGTGCCACCAGTGGATTACAAGGGGCAGGAGGTGTTTTGGCTGGGGCGCGGCTCATCACCGCTACGCAGACCCAAAACAAAAAGGCGCCCGATCTCACGATCAAGGC                                                                                                                                                            <  1:40763/150‑1  GGGCCGGTGTTTCAACCGGCTGAAATCTAACAGCTTTTATTGGGGTGCCACCAGTGGATTACAAGGGCCTTGAGGTGTTTTGGCTGGGGCGCGGCTCATCACCGCTACGCAGACCCAAAACAAAAAGGCGCCCGATCTCACGATCAAGGC                                                                                                                                                            <  1:42283/150‑1    GCCGGTGTTTCAACCGGCTGAAATCTAACAGCTTTTATTGGGGTGCCACCAGTGGATTACAAGGGGCAGGAGGTGTTTTGGCTGGGGCGCGGCTCATCACCGCTACGCAGACCCAAAACAAAAAGGCGCCCGATCTCACGATCAAGGCGC                                                                                                                                                          <  1:334303/150‑1                               ACAGCTTTTATTGGGGTGCCACCAGTGGATTACAAGGGGCAGGAGGTGTTTTGGCTGGGGCGCGGCTCATCACCGCTACGCAGACCCAAAACAAAAAGGCGCCCGATCTCACGATCAAGGCGCCTTT                                                                                                                                                      >  2:160840/1‑127                               ACAGCTTTTATTGGGGTGCCACCAGTGGATTACAAGGGGCAGGAGGTGTTTTGGCTGGGGCGCGGCTCATCACCGCTACGCAGACCCAAAACAAAAAGGCGCCCGATCTCACGATCAAGGCGCCTTT                                                                                                                                                      <  1:160840/127‑1                                                                                                                      AAAACAAAAAGGCGCCCGATCTCACGATCTAGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTG                                                                              <  2:1306956/112‑1                                                                                                                      AAAACAAAAAGGCGCCCGATCTCACGATCAAGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTG                                                                              >  1:1306956/1‑112                                                                                                                                 GCGCCCGATCTCACGATCAAGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGCCGGTTGAAACACCGGC                             >  1:1516807/1‑150                                                                                                                                       GATCTCACGATCAAGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGA                                                                                                                             <  2:1080427/48‑1                                                                                                                                       GATCTCACGATCAAGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGA                                                                                                                             >  1:1080427/1‑48                                                                                                                                                  ccgcGCGCCTTGTGTTTTTGGGCCTCCCTAGCGGTGATGAGCCGCGCCCCAGCGAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGCCGGTTGAAACCCCGGCCCGTTTGGCCGGCAAAG            <  2:897455/146‑1                                                                                                                                                      GCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGGGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGG                                                                          <  1:92449/84‑1                                                                                                                                                      GCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGGGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGG                                                                          >  2:92449/1‑84                                                                                                                                                      GCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGCC                                            >  1:2403038/1‑114                                                                                                                                                      GCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGCC                                            <  2:2403038/114‑1                                                                                                                                                        GCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGCCGGTTGAAACACCGGCCCGTTTGGCCGGCAAAGGACACC      <  1:2386401/150‑1                                                                                                                                                        GCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAA                                                             >  1:2109717/1‑95                                                                                                                                                        GCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAA                                                             <  2:2109717/95‑1                                                                                                                                                           TTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGCCGGTTGAAACACCGGCCCGTTTGGCCGGCAAAGGACACCACG   >  1:666321/1‑150                                                                                                                                                            TTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGCCGGTTGAAACACCGGCCCGTTTGGCCGGCAAAGGACACCNCGA  <  2:1514289/150‑1                                                                                                                                                                                                                                                                                                                   CGGGCCGGTGTTTCAACCGGCTGAAATCTAACAGCTTTTATTGGGGTGCCACCAGTGGATTACAAGGGGCAGGAGGTGTTTTGGCTGGGGCGCGGCTCATCACCGCTACGCAGACCCAAAACAAAAAGGCGCCCGATCTCACGATCAAGGCGCCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2626405‑2626249 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcctttTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGCCGGTTGAAACACCGGCCCGTTTGGCCGGCAAAGGACACCACGA  >  NC_002947/2626282‑2626429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.