| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2954675 | 43 (0.460) | 12 (0.140) | 8/228 | NT | 23.7% | intergenic (‑135/‑146) | PP_2586/PP_2587 | putative amino acid transporter/LuxR family transcriptional regulator |
| ? | NC_002947 | = 2954738 | 38 (0.450) | intergenic (‑198/‑83) | PP_2586/PP_2587 | putative amino acid transporter/LuxR family transcriptional regulator | |||||
GTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCAC‑A‑CCCTGCAGGCA‑CC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2954521‑2954675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcaggca‑ccGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGGGTGATTCCGGGTGCCTGCAGGGTGTGGGAGCATCAACCCGCCCCAGCGCTGCGAGCTTTCCGCTCGACCTCCTTGCACAACACCTGACGGTCG < NC_002947/2954738‑2954592 GTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCAC‑A‑CCCTGCAG < 1:971488/150‑1 CTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCAC‑A‑CCCT < 1:1775818/143‑1 CTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACAGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCAC‑A‑CCCT > 2:1775818/1‑143 TGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCAC‑A‑CCCTGCAG < 1:1490298/110‑1 TGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCAC‑A‑CCCTGCAG > 2:1490298/1‑110 ACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATACTCCCAC‑GGCGCTGCAGGCA‑CCGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGC > 2:1684331/1‑150 GCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCAC‑A‑CCCTGCAGGCA‑CCGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCAC < 1:140198/150‑1 GCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATACTCCCACGG‑CGCTGCAGGCA‑CCGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCC < 1:1684331/150‑1 gGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCAC‑A‑CCCTGCAGGCA‑CCGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGGGT < 2:1122080/149‑1 TCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCAC‑A‑CCCTGCAGGCA‑CCGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAA < 1:1081779/130‑1 TCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCAC‑A‑CCCTGCAGGCA‑CCGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAA > 2:1081779/1‑130 GGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCAC‑A‑CCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACC > 2:461371/1‑123 GGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCAC‑A‑CCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACC < 1:461371/123‑1 TGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCAC‑A‑CCCTGCAGGCA‑CCGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAG > 1:1502528/1‑121 TGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCAC‑A‑CCCTGCAGGCA‑CCGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAG < 2:1502528/121‑1 GAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCAC‑A‑CCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCA > 1:1298328/1‑102 GAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCAC‑A‑CCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCA < 2:1298328/102‑1 A‑CCGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGGGTGATTCCGGGTGCCTGCAGGGTGTGGGAGCATCAACCCGCCCCAGCGCTGCGAGCTTTCCGCTCGACCTCCTTGCACAACACCTGACGGTCG > 2:1146862/1‑150 A‑CCGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGGGTGATTCCGGGTGCCTGCAGGGTGTGGGAGCATCAACCCGCCCCAGCGCTGCGAGCGTTCCGCTCGACCTCCTGGCACAACACCGGACGGTCG > 2:501184/1‑150 CGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGGGTGATTCCGGGTGCCTGCAGGGTGTGGGAGCATCAACCCGCCCCAGCGCTGCGAGCTTTC < 2:1299156/115‑1 CGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGGGTGATTCCGGGTGCCTGCAGGGTGTGGGAGCATCAACCCGCCCCAGCGCTGCGAGCTTTC > 1:1299156/1‑115 GTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCAC‑A‑CCCTGCAGGCA‑CC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2954521‑2954675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcaggca‑ccGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGGGTGATTCCGGGTGCCTGCAGGGTGTGGGAGCATCAACCCGCCCCAGCGCTGCGAGCTTTCCGCTCGACCTCCTTGCACAACACCTGACGGTCG < NC_002947/2954738‑2954592 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |