New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2954675	43 (0.460)	12 (0.140)	8/228	NT	23.7%	intergenic (‑135/‑146)	PP_2586/PP_2587	putative amino acid transporter/LuxR family transcriptional regulator
	?	NC_002947	= 2954738	38 (0.450)					intergenic (‑198/‑83)	PP_2586/PP_2587	putative amino acid transporter/LuxR family transcriptional regulator

CGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACCAATCAATTGCTTTCAGAACAATGGTTCGAGCACCAGGCCAAGGTCACCGAGGCGATCGGCC  >  NC_002947/2954592‑2954887                                                                                                                                                    |                                                                                                                                                      cgACCGTCCGGTGTTGTGCCAGGAGGTCGAGCGGAACGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCggt                                                                                                                                                    >  2:501184‑M2/1‑147 (MQ=255) cgACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCggt                                                                                                                                                    >  2:1146862‑M2/1‑147 (MQ=255)              ttgtGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTACCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCg                                                                                                                                       >  1:1808349/1‑150 (MQ=255)                 tgCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTg                                                                                                                                     >  2:1964875/1‑149 (MQ=255)                 tgCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTg                                                                                                                                     <  1:1964875/149‑1 (MQ=255)                   cAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGa                                                                                                                                  <  2:1536241/150‑1 (MQ=255)                      ggaggTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTa                                                                                                                               >  2:2046889/1‑150 (MQ=255)                                  gAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCg                                                                                                                                                      <  2:1299156‑M2/115‑2 (MQ=255)                                  gAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCg                                                                                                                                                      >  1:1299156‑M2/1‑114 (MQ=255)                                  gAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAacga                                                                                                                   <  2:639324/150‑1 (MQ=255)                                                                      cacCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAG‑CGGACACAGCCCTCGCCCGGCTCACACCCTTTTTTGATTCGGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACgg                                                                               <  1:542355/150‑1 (MQ=255)                                                                                gCACCCGGAATCACCCTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACa                                                                     >  2:406150/1‑150 (MQ=255)                                                                                  aCCCGGAATCACCCTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGt                                                                   <  2:1808349/150‑1 (MQ=255)                                                                                   cccGGAATCACCCTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTg                                                                  >  1:1735194/1‑150 (MQ=255)                                                                                    ccGGAATCACCCTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGa                                                                 >  2:1933682/1‑150 (MQ=255)                                                                                        aaTCACCCTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACcaa                                                             <  1:406150/150‑1 (MQ=255)                                                                                          tCACCCTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACcaatc                                                           >  1:186316/1‑150 (MQ=255)                                                                                            aCCCTTTGGGGTGAGCCGGGCAAGGTCTGTGTCC‑GCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACcaatcaa                                                         >  2:746976/1‑150 (MQ=25)                                                                                            aCCCTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCggtgcctgcagggtgtgggagcatcaacccgccccagcgctgcgagctttccgctcgacctccttgcacaacacctgacggtcgcgagcctgcc                                                         <  2:1122080‑M2/150‑95 (MQ=255)                                                                                             cccTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGCGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACcaatcaat                                                        <  2:2299397/150‑1 (MQ=255)                                                                                             cccTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACcaatcaat                                                        <  2:2299258/150‑1 (MQ=255)                                                                                               cTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCggtgcctgcagggtgtgggagcatcaacccgccccagcgctgcgagctttccgctcgacctccttgca                                                                                   <  2:1502528‑M2/121‑69 (MQ=255)                                                                                               cTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCggtgcctgcagggtgtgggagcatcaacccgccccagcgctgcgagctttccgctcgacctccttgca                                                                                   >  1:1502528‑M2/1‑53 (MQ=255)                                                                                                tttGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCggtgcctgcagggtgtgggagcatcaacccgccccagcgctgcgagctttccgctcgacctccttgcacaacacctga                                                                         <  1:1081779‑M2/130‑79 (MQ=255)                                                                                                tttGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCggtgcctgcagggtgtgggagcatcaacccgccccagcgctgcgagctttccgctcgacctccttgcacaacacctga                                                                         >  2:1081779‑M2/1‑52 (MQ=255)                                                                                                tttGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACCAATCAATTGc                                                     >  1:1913642/1‑150 (MQ=255)                                                                                                    gggTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCggtgcctgcagcgccgtgggagtatcaacccgccccagcgctgcgagctttccgctcgacctccttgcacaacacctgacggtcgcgagcctgctcgcctgc                                                 <  1:1684331‑M2/150‑103 (MQ=255)                                                                                                     ggTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCgggtgcctgcagggtgtgggagcatcaacccgccccagcgctgcgagctttccgctcgacctccttgcacaacacc                                                                           <  1:461371‑M2/123‑77 (MQ=255)                                                                                                     ggTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCgggtgcctgcagggtgtgggagcatcaacccgccccagcgctgcgagctttccgctcgacctccttgcacaacacc                                                                           >  2:461371‑M2/1‑47 (MQ=255)                                                                                                      gTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCggtgcctgcagggtgtgggagcatcaacccgccccagcgctgcgagctttccgctcgacctccttgcacaacacctgacggtcgcgagcctgctcgcctgccgc                                               <  1:140198‑M2/150‑105 (MQ=255)                                                                                                       tGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCgggtgcctgcagggtgtgggagcatcaacccgccccagcgctgcgagctttccgctc                                                                                              >  1:1298328‑M2/1‑45 (MQ=255)                                                                                                       tGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCgggtgcctgcagggtgtgggagcatcaacccgccccagcgctgcgagctttccgctc                                                                                              <  2:1298328‑M2/102‑58 (MQ=255)                                                                                                       tGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACa                                                                     <  1:2002776/127‑1 (MQ=255)                                                                                                       tGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACa                                                                     >  2:2002776/1‑127 (MQ=255)                                                                                                          g‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCggtgcctgcagcgccgtgggagtatcaacccgccccagcgctgcgagctttccgctcgacctccttgcacaacacctgacggtcgcgagcctgctcgcctgccgcggt                                           >  2:1684331‑M2/1‑42 (MQ=255)                                                                                                          g‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGc                                                                                                                          <  2:250554/71‑1 (MQ=255)                                                                                                          g‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGc                                                                                                                          >  1:250554/1‑71 (MQ=255)                                                                                                                   aGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGc                                                                                             >  2:634923/1‑92 (MQ=255)                                                                                                                   aGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGc                                                                                             <  1:634923/92‑1 (MQ=255)                                                                                                                     cccTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAAAGGCAGGCTTACTGTCACCAAACAACCCCCCCCAGAACAATGGTTCGAg                                 >  2:625090/1‑150 (MQ=255)                                                                                                                       cTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCa                                                                             <  2:1488618/104‑1 (MQ=255)                                                                                                                       cTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCa                                                                             >  1:1488618/1‑104 (MQ=255)                                                                                                                            ccGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACCAATCAATTGCTTTCAGAACAATGGtt                                     <  1:273796/139‑1 (MQ=255)                                                                                                                            ccGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACCAATCAATTGCTTTCAGAACAATGGtt                                     >  2:273796/1‑139 (MQ=255)                                                                                                                                 tCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACCAATCAATTGCTTTCAGAACAATGGTTCGAGCCCCAGGACAAg                     <  2:1913642/150‑1 (MQ=255)                                                                                                                                 tCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACCAATCAATTGCTTTCAGAACAATGGTTCGAGCACCAGGCCAAg                     <  1:944106/150‑1 (MQ=255)                                                                                                                                     cccAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACCAATCAATTGCTTTCAGaa                                             >  2:1375661/1‑122 (MQ=255)                                                                                                                                     cccAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACCAATCAATTGCTTTCAGaa                                             <  1:1375661/122‑1 (MQ=255)                                                                                                                                     cccAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACCAATCAATTGCTTTCAGAACAATGGTTCGAGCACCAGGCCAAGGTCa                 >  2:632060/1‑150 (MQ=255)                                                                                                                                      ccAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCACGACATCAGTGACCAATCAATTGCTTTCAGAACAATGGTTCGAGCACCAGGCCAAGGTCAc                >  1:1845043/1‑150 (MQ=255)                                                                                                                                       cAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACCAATCAATTGCTTTCAGAACAATGGTTCGAGCACCAGGCCAAGGTCAcc               >  2:1857548/1‑150 (MQ=255)                                                                                                                                       cAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACCAATCAATTGCTTTCAGAACAATGGTTCGAGCACCAGGCCAAGGTCAcc               >  2:1603593/1‑150 (MQ=255)                                                                                                                                          aGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACCAATCAATTGCTTTCAGAACAATGGTTCGAGCACCAGGCCAAGGTCACCGAg            <  1:1933682/150‑1 (MQ=255)                                                                                                                                            ggggATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACCAATCAATTGCTTTCAGAACAATGGTTCGAGCACCAGGCCAAGGTCACCGAGGc          >  1:421098/4‑150 (MQ=255)                                                                                                                                              tGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACCAATCAATTGCTTTCAGAACAATGGTTCGAGCACCAGGCCAAGGTCACCGAGGCGa        >  2:1179097/1‑150 (MQ=255)                                                                                                                                                 ttCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACCAATCAATTGCTTTCAGAACAATGGTTCGAGCACCAGGCCAAGGTCACCGAGGCGATcg     >  1:2263551/1‑150 (MQ=255)                                                                                                                                                    cGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACCAATCAATTGCTTTCAGAACAATGGTTCGAGCACCAGGCCAAGGTCACCGAGGCGATcggcc  >  2:3234/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAG‑CGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCGCCGTGGGAGTATCTGCTCAACGACGCACCGCACTGGCGGCGGTGCCACTGAGAAAACGGCAGGCTTACAGTGACCAATCAATTGCTTTCAGAACAATGGTTCGAGCACCAGGCCAAGGTCACCGAGGCGATCGGCC  >  NC_002947/2954592‑2954887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.