| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4301353 | 71 (0.760) | 7 (0.080) | 6/238 | NT | 8.8% | coding (474/675 nt) | PP_3774 | hypothetical protein |
| ? | NC_002947 | = 4301361 | 77 (0.870) | coding (482/675 nt) | PP_3774 | hypothetical protein | |||||
GCGGGGACGACGGCCCGCCGGTAAAGGTGTTCTGGAACAAGGGCAACATCACCCTGGGGTTTCGGCGCACCTTCAACCAGACCGACCCGGTGAATTCCACAGTCCTGAAGGGGGTGCCACTGGGTGCGACGTTCAACATCAGCATTCACACCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4301199‑4301353‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accacgCCTTCAGACGTGGTGTGAATGCTGATGTTGAACGTCGCACCCAGTGGCACCCCCTTCAGGACTGTGGAATTCACCGGGTCGGTCTGGTTGAAGGTGCGCCGAAACCCCAGGGTGATGTTGCCCTTGTTCCAGAACACCTTTACCGGCGG < NC_002947/4301361‑4301213 GCGGGGACGACGGCCCGCCGGTAAAGGTGTTCTGGAACAAGGGCAACATCACCCTGGGGTTTCGGCGCACCTTCAACCAGACCGACCCGGTGAATTCCACAGTCCTGAAGGGGGTGCCACTGGGTGCGACGTTCAACATCAGCATTCACA < 2:1319950/150‑1 CGGGGACGACGGCCCGCCGGTAAAGGTGTTCTGGAACAAGGGCAACATCACCCTGGGGTTTCGGCGCACCTTCAACCAGACCGACCCGGTGAATTCCACAGTCCTGAAGGGGGTGCCACTGAGTGCGACGTTCAACATCAGCATTCACAC < 1:138185/150‑1 GGGACGACGGCCCGCCGGTAAAGGTGTTCTGGAACAAGGGCAACATCACCCTGGGGTTTCGGCGCACCTTCAACCAGACCGACCCGGTGAATTCCACAGTCCTGAAGGGGGTGCCACTGGGTGCGACGTTCAACATCAGCATTCACACCA < 1:1394822/150‑1 GGGACGACGGCCCGCCGGTAAAGGTGTTCTGGAACAAGGGCAACATCACCCTGGGGTTTCGGCGCACCTTCAACCAGACCGACCCGGTGAATTCCACAGTCCTGAAGGGGGTGCCACTGGGTGCGACGTTCAACATCAGCATTCACACCA > 1:356258/1‑150 GGACGACGGCCCGCCGGTAAAGGTGTTCTGGAACAAGGGCAACATCACCCTGGGGTTTCGGCGCACCTTCAACCAGACCGACCCGGTGAATTCCACAGTCCTGAAGGGGGTGCCACTGGGTGCGACGTTCAACATCAGCATTCACACCAC < 1:208842/150‑1 GGACGACGGCCCGCCGGTAAAGGTGTTCTGGAACAAGGGCAACATCACCCTGGGGTTTCGGCGCACCTTCAACCAGACCGACCCGGTGAATTCCACAGTCCTGAAGGGGGTGCCACTGGGTGCGACGTTCAACATCAGCATTCACACCAC > 1:743368/1‑150 ACGGCCCGCCGGTAAAGGTGTTCTGGAACAAGGGCAACATCACCCTGGGGTTTCGGCGCACCTTCAACCAGACCGACCCGGTGAATTCCACAGTCCTGAAGGGGGTGCCACTGGGTGCGACGTTCAACATCAGCATTCACACCAC < 2:338726/145‑1 ACGGCCCGCCGGTAAAGGTGTTCTGGAACAAGGGCAACATCACCCTGGGGTTTCGGCGCACCTTCAACCAGACCGACCCGGTGAATTCCACAGTCCTGAAGGGGGTGCCACTGGGTGCGACGTTCAACATCAGCATTCACACCAC > 1:338726/1‑145 CGGTAAAGGTGTTCTGGAACAAGGGCAACATCACCCTGGGGTTTCGGCGCACCTTCAACCAGACCGACCCGGTGAATTCCACAGTCCTGAAGGGGGTGCCACTGGGTGCGACGTTCAACATCAGCATTCACACCACGCCTTCAGACGTGG < 1:378425/150‑1 AAGGGGGTGCCACTGGGTGCGACGTTCAACATCAGCATTCACACCACGCCTTCAGACGTGGT < 1:1687835/62‑1 AAGGGGGTGCCACTGGGTGCGACGTTCAACATCAGCATTCACACCACGCCTTCAGACGTGGT > 2:1687835/1‑62 GTGCCACTGGGTGCGACGTTCAACATCAGCATTCACACCACGCCTTCAGACGTGGT < 1:40440/56‑1 GTGCCACTGGGTGCGACGTTCAACATCAGCATTCACACCACGCCTTCAGACGTGGT > 2:40440/1‑56 ATTCACACCACGTCTGAAGGCGTGGTGTGAATGCTGATGTTGAACGTCGCACCCAGTGGCACCCCCTTCAGGACTGTGGAATTCACCGGGTCGGTCTGGTTGAAGGTGCGCCGAAACCCCAGGGTGATGTTGCC < 2:1147583/134‑1 ATTCACACCACGTCTGAAGGCGTGGTGTGAATGCTGATGTTGAACGTCGCACCCAGTGGCACCCCCTTCAGGACTGTGGAATTCACCGGGTCGGTCTGGTTGAAGGTGCGCCGAAACCCCAGGGTGATGTTGCC > 1:1147583/1‑134 CACGCCTTCAGACGTGGTGTGAATGCTGATGTTGAACGTCGCACCCAGTGGCACCCCCTTCAGGACTGTGGAATTCACCGGGTCGGTCTGGTTGAAGGTGCGCCGAAACCCCAGGGTGATGTTGCCCTTGTTCCAGAACACCTTTACCGG > 1:567517/1‑150 CACGCCTTCAGACGTGGTGTGAATGCTGATGTTGAACGTCGCACCCAGTGGCACCCCCTTCAGGACTGTGGAATTCACCGGGTCGGTCTGGTTGAAGGTGCGCCGAAACCCCAGG < 2:1490561/115‑1 CACGCCTTCAGACGTGGTGTGAATGCTGATGTTGAACGTCGCACCCAGTGGCACCCCCTTCAGGACTGTGGAATTCACCGGGTCGGTCTGGTTGAAGGTGCGCCGAAACCCCAGG > 1:1490561/1‑115 ACGCCTTCAGACGTGGTGTGAATGCTGATGTTGAACGTCGCACCCAGTGGCACCCCCTTCAGGACTGTGGAATTCACCGGGTCGGTCTGGTTGAAGGTGCGCCGAAACCCCAGGGTGATGTTGCCCTTGTTCCAGAACACCTTTACCGGC > 1:180618/1‑150 ACGCCTTCAGACGTGGTGTGAATGCTGATGTTGAACGTCGATCCCAGTGGCACAACAACCAGGACTGTGGAATTCACCGGGTCGGTCTGGTTGAAGGTGCGCCGAAACCCCAGGGTGATGTTGCCCTTGTTCCAGAACACCTTTACCGGC > 2:82262/1‑150 GCCTTCAGACGTGGTGTGAATGCTGATGTTGAACGTCGCACCCAGTGGCACCCCCTTCAGGACTGTGGAATTCACCGGGTCGGTCTGGTTGAAGGTGCGCCGAAACCCCAGGGTGATGTTGCCCTTGTTCCAGAACACCTTTACCGGCGG > 2:743368/1‑150 GCGGGGACGACGGCCCGCCGGTAAAGGTGTTCTGGAACAAGGGCAACATCACCCTGGGGTTTCGGCGCACCTTCAACCAGACCGACCCGGTGAATTCCACAGTCCTGAAGGGGGTGCCACTGGGTGCGACGTTCAACATCAGCATTCACACCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4301199‑4301353‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accacgCCTTCAGACGTGGTGTGAATGCTGATGTTGAACGTCGCACCCAGTGGCACCCCCTTCAGGACTGTGGAATTCACCGGGTCGGTCTGGTTGAAGGTGCGCCGAAACCCCAGGGTGATGTTGCCCTTGTTCCAGAACACCTTTACCGGCGG < NC_002947/4301361‑4301213 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |