New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4386290	78 (0.840)	5 (0.060)	5/238	NT	6.3%	coding (163/501 nt)	PP_3862	assembly protein
	?	NC_002947	= 4386310	75 (0.840)					coding (143/501 nt)	PP_3862	assembly protein

TTTCCATCTCGATGAGCCGACCACGCTTGAGCACAACCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4386137‑4386290 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcTTGAAGGCGCCGAGGCCTTGGCGGGCTTTATCGGTGACCGCAGTCACGGCGTGGTGCTGGTGGTGTCGGATCGGCGGTACCGCCTGCCCGGCCTGCAGGGCGGTGAAGTGGCCTTGTACACCGACGAAGGCGACCGGGTTGTGCTC  <  NC_002947/4386310‑4386165                                                                                                                                                                                                                                                                                                              TTTCCATCTCGATGAGCCGACCACGCTTGAGCACAACCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGC                                                                                                                                                        >  1:1703126/1‑150  TTCCATCTCGATGAGCCGACCACGCTTGAGCACAACCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCACCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCC                                                                                                                                                       <  1:2061887/150‑1     CATCTCGATGAGCCGACCACGCTTGAGCACAACCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGGAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGC                                                                                                                                                    <  2:494120/150‑1     CATCTCGATGAGCCGACCACGCTTGAGCACAACCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGC                                                                                                                                                    <  2:2327222/150‑1     CATCTCGATGAGCCGACCACGCTTGAGCACAACCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGC                                                                                                                                                    <  2:1703126/150‑1     CATCTCGATGAGCCGACCACGCTTGAGCACAACCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGC                                                                                                                                                    >  2:165278/1‑150                          CTTGAGCACAACCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGC‑‑CAAGGCGCCGAGGCCTTGGCG                                                                                                                             >  1:1468121/1‑150                              AGCACAACCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGC‑‑CAAGGCGCCGAGGCCTTGGCGGGCT                                                                                                                         <  2:1468121/150‑1                                    cCCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGTAAACACCAGCACCACGCCTTGACTGCGTTCACCGATAAAGCCCGCTTGAAGGCGCCGAGGCCTTGGCGGGCTTTAT                                                                                                                     <  1:886773/149‑1                                               TTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGC                                                                                                                                                    <  2:433284/108‑1                                               TTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGC                                                                                                                                                    >  1:433284/1‑108                                                               GCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCTTGAAGGCGCCGAGGCCTTGGCGGGCTTTATCG                                                                                                                   <  1:1980389/125‑1                                                               GCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCTTGAAGGCGCCGAGGCCTTGGCGGGCTTTATCG                                                                                                                   >  2:1980389/1‑125                                                                                                                                                     GCCCGCTTGAAGGCGCCGAGGCCTTGGCGGGCTTTATCGGTGACCGCAGTCACGGCGTGGTGCTGGTGGTGTCGGATCGGCGGTACCGCCTGCCCGGCCTGCAGGGCGGTGAAGTGGCCTTGTACACCGACGAAGGCGACCGTGTTGTGC    <  2:524150/150‑1                                                                                                                                                     GCCCGCTTGAAGGCGCCGAGGCCTTGGCGGGCTTTATCGGTGACCGCAGTCACGGCGTGGTGCTGGTGGTGTCGGATCGGCGGTACCGCCTGCCCGGCCTGCAGGGCGGTGAAGTGGCCTTGTACACCGACGAAGGCGACCGGGTTGTGC    <  2:116395/150‑1                                                                                                                                                     GCCCGCTTGAAGGCGCCGAGGCCTTGGCGGGCTTTATCGGTGACCGCAGTCACGGCGTGGTGCTGGTGGTGTCGGATCGGCGGTACCGCCTGCCCGGCCTGCAGGGCGGTGAAGTGGCCTTGTACACCGACGAAGGCGACCGGGTTGTGC    <  2:1013997/150‑1                                                                                                                                                      CCCGCTTGAAGGCGCCGAGGCCTTGGCGGGCTTTATCGGTGACCGCAGTCACGGCGTGGTGCTGGTGGTGTCGGATCGGCGGTACCGCCTGCCCGGCCTGCAGGGCGGTGAAGTGGCCTTGTACACCGACGAAGGCGACCGGGTTGTGCT   >  2:1921792/1‑150                                                                                                                                                      CCCGCTTGAAGGCGCCGAGGCCTTGGCGGGCTTTATCGGTGACCGCAGTCACGGCGTGGTGCTGGTGGTGTCGGATCGGCGGTACCGCCTGCCCGGCCTGCAGGGCGGTGAAGTGGCCTTGTACACCGACGAAGGCGACCGGGGTGTGCT   >  2:1546392/1‑150                                                                                                                                                      CCCGCTTGAAGGCGCCGAGGCCTTGGCGGGCTTTATCGGTGACCGCAGTCACGGCGTGGTGCTGGTGGTGTCGGATCGGCGGTACCGCCTGCCCGGCCTGCAGGGCGGTGAA                                         >  1:459152/1‑112                                                                                                                                                      CCCGCTTGAAGGCGCCGAGGCCTTGGCGGGCTTTATCGGTGACCGCAGTCACGGCGTGGTGCTGGTGGTGTCGGATCGGCGGTACCGCCTGCCCGGCCTGCAGGGCGGTGAA                                         <  2:459152/112‑1                                                                                                                                                      CCCGCTTGAAGGCGCCGAGGCCTTGGCGGGCTTTATCGGTGACCGCAGTCACGGCGTGGTGCTGGTGGTGTCGGATCGGCGGTACCGCCTGCCCGGCCTGCAGGGCGGTG                                           >  2:1712148/1‑110                                                                                                                                                      CCCGCTTGAAGGCGCCGAGGCCTTGGCGGGCTTTATCGGTGACCGCAGTCACGGCGTGGTGCTGGTGGTGTCGGATCGGCGGTACCGCCTGCCCGGCCTGCAGGGCGGTG                                           <  1:1712148/110‑1                                                                                                                                                      CCCGCTTGAAGGCGCCGAGGCCTTGGCGGGCTTTATCGGTGACCGCAGTCACGGCGTGGTGCTGGTGGTGTCGGATCGGCGGTACCGCCTGCCCGGCCTGCAGGGCGGT                                            >  2:1510375/1‑109                                                                                                                                                      CCCGCTTGAAGGCGCCGAGGCCTTGGCGGGCTTTATCGGTGACCGCAGTCACGGCGTGGTGCTGGTGGTGTCGGATCGGCGGTACCGCCTGCCCGGCCTGCAGGGCGGT                                            <  1:1510375/109‑1                                                                                                                                                       CCGCTTGAAGGCGCCGAGGCCTTGGCGGGCTTTATCGGTGACCGCAGTCACGGCGTGGTGCTGGTGGTGTCGGATCGGCGGTACCGCCTGCCCGGCCTGCAGGGCGGTGAAGTGGCCTTGTACACCGACGAAGGCGACCGGGTTGTGCTC  >  1:266628/1‑150                                                                                                                                                                                                                                                                                                              TTTCCATCTCGATGAGCCGACCACGCTTGAGCACAACCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4386137‑4386290 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcTTGAAGGCGCCGAGGCCTTGGCGGGCTTTATCGGTGACCGCAGTCACGGCGTGGTGCTGGTGGTGTCGGATCGGCGGTACCGCCTGCCCGGCCTGCAGGGCGGTGAAGTGGCCTTGTACACCGACGAAGGCGACCGGGTTGTGCTC  <  NC_002947/4386310‑4386165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.