| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5119648 | 127 (1.360) | 10 (0.120) | 7/220 | NT | 7.6% | intergenic (+33/+98) | PP_4505/PP_4506 | sensor histidine kinase/nitroreductase family protein |
| ? | NC_002947 | = 5119695 | 131 (1.600) | intergenic (+80/+51) | PP_4505/PP_4506 | sensor histidine kinase/nitroreductase family protein | |||||
ATGGCCTGGGGCTGGCGATTGCGCGCAAGGCAGCGGAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5119485‑5119648‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggtGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGTGGATGATTCTC < NC_002947/5119695‑5119547 ATGGCCTGGGGCTGGCGATTGCGCGCAAGGCAGCGGAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAG < 1:1199813/150‑1 CCTGGGGCTGGCGATTGCGCGCAAGGCAGCGGAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCT < 2:1806593/150‑1 CCTGGGGCTGGCGATTGCGCGCAAGGCAGCGGAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGAGGGATTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTAAGGGGGTGCAAAGGCGCCAGGCCc > 2:659589/1‑149 TGGGGCTGGCGATTGCGCGCAAGGCAGCGGAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCT > 2:1642857/1‑150 GGGCTGGCGATTGCGCGCAAGGCAGCGGAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTC < 1:2163114/150‑1 gGGCGATTGCGCGCAAGGCAGCGGAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGG < 2:99768/149‑1 TGGCGATTGCGCGCAAGGCAGCGGAGCGCCATGGCGGTGGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGG > 1:190905/1‑150 TGGCGATTGCGCGCAAGGCAGCGGAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGG > 1:1064577/1‑150 TGGCGATTGCGCGCAAGGCAGCGGAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGG < 2:456179/150‑1 TGGCGATTGCGCGCAAGGCAGCGGAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGG < 1:2391897/150‑1 TGGCGATTGCGCGCAAGGCAGCGGAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGACGGGGTGCAAAGGCGCCAGGCCTCTTCGCGG < 1:235527/150‑1 GGCGATTGCGCGCAAGGCAGCGGAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGGGCAAAGGCGCCAGGCCTCTTCGCGGG > 2:2346527/1‑150 GGCAGCGGAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTAGCGGGTCAACCCGCTCCTAC > 1:740517/1‑150 GATGCTGGAGAATCATGCCCAGGGCGGGTTTGTCGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGC < 2:979420/150‑1 TGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTT > 1:1172301/1‑150 CACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGG > 1:2052115/1‑130 CACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTAAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGG < 2:2052115/130‑1 GGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCT < 2:1172301/150‑1 CCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGca < 1:1265765/115‑3 CCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAA > 2:1265765/1‑115 CCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGG > 2:2400928/1‑102 CCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGG < 1:2400928/102‑1 GGCCTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCC < 2:1397320/150‑1 CTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGTTTTGTCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGT < 2:1250733/150‑1 CTCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGT < 1:1311004/150‑1 TCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGTG < 1:2048192/150‑1 TCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGTG < 2:1031877/150‑1 TCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGTG > 1:1390612/1‑150 TCTTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGTG < 2:2079200/150‑1 TTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGTGGA < 1:1026855/150‑1 TTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGTGGA > 2:1905292/1‑150 TTCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGGTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGTGGA > 2:1908886/1‑150 TCGCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGTGGAT < 1:269574/150‑1 TCGCGGGTGAACCCGCTCCCACAACATCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGTGGAT < 2:1761561/150‑1 TCGCGGGTGAACCCGCTACTACACATTCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGTGGAT < 2:553796/150‑1 GCGGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGTGGATGA < 1:2356762/150‑1 GGGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGTGGATGATT < 2:89386/150‑1 GGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAG > 1:2420767/1‑108 GGTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAG < 2:2420767/108‑1 GTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACATACCCACCCTGTGGATGATTCT > 1:2372401/1‑150 GTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGTGGATGATTCT < 1:1190026/150‑1 GTGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGCCCGCACTAGCCTGGCCACAAACCCACCCTGTGGATGATTCT > 2:2411140/1‑150 TGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGTGGATGATTCTC < 1:1950457/150‑1 ATGGCCTGGGGCTGGCGATTGCGCGCAAGGCAGCGGAGCGCCATGGCGGTAGCCTGATGCTGGAGAATCATCCACAGGGTGGGTTTGTGGCCAGGCTGGAGTTGCCCTTGGCTGGAGCGGCAGGCAGTTGATGGGGTGCAAAGGCGCCAGGCCTCTTCGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5119485‑5119648‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggtGAACCCGCTCCTACAACAGCATCCACATCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCTGGCGCCTTTGCACCCCATCAACTGCCTGCCGCTCCAGCCAAGGGCAACTCCAGCCTGGCCACAAACCCACCCTGTGGATGATTCTC < NC_002947/5119695‑5119547 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |