New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5240403 = | 78 (0.840) | 5 (0.060) | 5/242 | NT | 6.2% | intergenic (‑41/‑84) | ldh/PP_4618 | leucine dehydrogenase/hypothetical protein |
? | NC_002947 | 5240429 = | 75 (0.830) | intergenic (‑67/‑58) | ldh/PP_4618 | leucine dehydrogenase/hypothetical protein |
AGTGGTCCGGCGGCGGCGTCAAGGCCGAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5240435‑5240403 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgGACCACTGGACGAAACCACGCGCCACGGCTAATACTCAAACGTGTGTGGAGATACCCCATGAAGCCACGTCAAGCCTGCCTGGCCTGCCTGGAACGCGAGCCTGTCGACCTGCTGGAAGCCGCACTGTGGATTGCTGCCGAGCACGACC > NC_002947/5240429‑5240577 AGTGGTCCGGCGGCGGCGTCAAGGCCGAGGCCGGACCACTGGACGAAACCACGCGCCACGGCTAATACTCAAACGTGTGTGGAGATACCCCATGAAGCCACGTCAAGCCTGCCTGGCCTGCC < 1:47376/122‑1 AGTGGTCCGGCGGCGGCGTCAAGGCCGAGGCCGGACCACTGGACGAAACCACGCGCCACGGCTAATACTCAAACGTGTGTGGAGATACCCCATGAAGCCACGTCAAGCCTGCCTGGCCTGCC > 2:47376/1‑122 GTCCGGCGGCGGCGTCAAGGCCGAGGCCGGACCACTGGACGAAACCACGCGCCACGGCTAATACTCAAACGTGTGT < 1:448161/76‑1 GTCCGGCGGCGGCGTCAAGGCCGAGGCCGGACCACTGGACGAAACCACGCGCCACGGCTAATACTCAAACGTGTGT > 2:448161/1‑76 CGGCGGCGGCGTCAAGGCCGAGGCCGGACCACTGGACGAAACCACGCGCCCCGGCTAATACTCAAACGTGTGTGGAGATACCCCATGAAGCCACGTCAAGCCTGCCTGGCCTGCCTGGAACGCGAGCCTGTCGACCTGCTGGAAGCCGCA > 1:1079353/1‑150 CCGGACCACTGGACGAAACCACGCGCCACGGCTAATACTCAAACGTGTGTGGAGATACCCCATGAAGCCACGTCAAGCCTGCCTGGCCTGCCTGGAACGCGAGCCTGTCGACCTGCTGGAAGCCGCACTGTGGATTGCTGCCGAGCACGA > 1:197680/1‑150 GGACCACTGGACGAAACCACGCGCCACGGCTAATACTCAAACGTGGGTGGAGATACCCCATGAAGCCACGTCAAGCCTGCCTGGCCTGCCTGGAACGCGGGCCTGTCGACCTGCTGGAAGCCGCACTGTGGATTGCTGCCGAGCACGACC > 1:737950/1‑150 AGTGGTCCGGCGGCGGCGTCAAGGCCGAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5240435‑5240403 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgGACCACTGGACGAAACCACGCGCCACGGCTAATACTCAAACGTGTGTGGAGATACCCCATGAAGCCACGTCAAGCCTGCCTGGCCTGCCTGGAACGCGAGCCTGTCGACCTGCTGGAAGCCGCACTGTGGATTGCTGCCGAGCACGACC > NC_002947/5240429‑5240577 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |