| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5665825 | 83 (0.890) | 6 (0.070) | 6/230 | NT | 7.1% | intergenic (‑70/‑213) | PP_4973/nhaP | membrane protein/NhaP‑type Na+(K+)/H+ antiporter |
| ? | NC_002947 | = 5665884 | 81 (0.940) | intergenic (‑129/‑154) | PP_4973/nhaP | membrane protein/NhaP‑type Na+(K+)/H+ antiporter | |||||
ACCAGCAAGCGCTCGCCACTGAATTTGATCAAGGTATTCCAGGTTGCATGCAGCAGGGCGGCAACCAGCACCAGAGATGTTGCCAACACGCCTTCTTGTCCTTATGGCTGTTCATGGCTGTGAATATATAGCGTTCAGGGGGGCTTTGGGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5665667‑5665825‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagcgggcGTGCCCGCGAACACCGGCAAAGCCGGTGCCATACACCGAGTTGCATTCTTCACGGGCATGCCCGCTCCCCCAAAGCCCCCCTGAACGCTATATATTCACAGCCATGAACAGCCATAAGGACAAGAAGGCGTGTTGGCAACATCTCTG < NC_002947/5665884‑5665738 ACCAGCAAGCGCTCGCCACTGAATTTGATCAAGGTATTCCAGGTTGCATGCAGCAGGGCGGCAACCAGCACCAGAGATGTTGCCAACACGCCTTCTTGTCCTTATGGCTGTTCATGGCTGTGAATATATAGCGTTCAGGGGGGCTTTGGG > 1:1815811/1‑150 CCAGCAAGCGCTCGCCACTGAATTTGATCAAGGTATTCCAGGTTGCATGCAGCAGGGCGGCAACCAGCACCAGAGATGTTGCCAACACGCCTTCTCGTCCTTATGGCTGTTCATGGCTGTGAATATATAGCGTTCAGGGGGGCTTTGGGG > 1:422998/1‑150 TCAAGGTATTCCAGGTTGCATGCAGCAGGGCGGCAACCAGCACCAGAGATGTTGCCAACACGCCTTCTTGTCCTTATGGCTGTTCATGGCTGTGAATATATAGCGTTCAGGGGGGCTTTGGGGGAGCGGGC < 1:1967653/131‑1 TCAAGGTATTCCAGGTTGCATGCAGCAGGGCGGCAACCAGCACCAGAGATGTTGCCAACACGCCTTCTTGTCCTTATGGCTGTTCATGGCTGTGAATATATAGCGTTCAGGGGGGCTTTGGGGGAGCGGGC > 2:1967653/1‑131 AACCAGCACCAGAGATGTTGCCAACACGCCTTCTTGTCCTTATGGCTGTTCATGGCTGTGAATATATAGCGTTCAGGGGGGCTTTGGGGGAGCGGGCGTGAACGCGAACACCGGCAAAGCCGGTGCCATACACCGAGTTGCATTCTTCAC > 1:1453723/1‑150 ACCAGCACCAGAGCTGTTGCCCACACCCCTTGTTGGCCGTATGTCTGTTCATGGCTGTGAATATATAGCGTTCAGGGGGGCTTTGGGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATACACCGAGTTGCATTCTTCACG < 2:1453723/150‑1 AACACGCCTTCTTGTCCTTATGGCTGTTCATGGCTGTGAATATATAGCGTTCAGGGGGGCTTTGGGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATACACCGAGTTGCATTCTTCACGGGCATGCCCGCTCC < 1:2303357/143‑1 AACACGCCTTCTTGTCCTTATGGCTGTTCATGGCTGTGAATATATAGCGTTCAGGGGGGCTTTGGGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATACACCGAGTTGCATTCTTCACGGGCATGCCCGCTCC > 2:2303357/1‑143 CCTTCTTGTCCTTATGGCTGTTCATGGCTGTGAATATATAGCGTTCAGGGGGGCTTTGGGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATACACCGAGTTGCATTCTTCACGG > 1:1060013/1‑124 CCTTCTTGTCCTTATGGCTGTTCATGGCTGTGAATATATAGCGTTCAGGGGGGCTTTGGGGGAGCGGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATACACCGAGTTGCATTCTTCACGG < 2:1060013/124‑1 GGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATACACCGAGTTGCATTCTTCACGGGCATGCCCGCTCCCCCAAAGCCCCCCTGAACGCTATATATTCACAGCCATGAACAGCCATAAGGACAAGAAGGCGTGTTGGCAACATCTCT < 1:255456/150‑1 GGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATACACCGAGTTGCATTCTTCACGGGCATGCCCGCTCCCCCAAAGCCCCCCTGAACGATATATATTCACAGCCATGAACAGCCATAAGGACAAGAAGGCGTGTTGGCAACATCTC > 1:1676115/1‑149 GGGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATACACCGAGTTGCATTCTTCACGGGCATGCCCGCTCCCCCAAAGCCCCCCTGAACGATATATATTCACAGCCATGAACAGCCATAAGGACAAGAAGGCGTGTTGGCAACATCTC < 2:1676115/149‑1 GGCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATACACCGAGTTGCATTCTTCACGGGCATGCCCGCTCCCCCAAAGCCCCCCTGAACGCTATATATTCACAGCCATGAACAGCCATAAGGACAAGAAGGCGTGTTGGCAACATCTCTG < 2:2223876/150‑1 GCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATACACCGAGTTGCATTCTTCACGGGCATGCCCGCTCCCCCAAAGCCCCCCTGAACGCTATATATTCACAGCC < 1:1772439/105‑1 GCGTGCCCGCGAACACCGGCAAAGCCGGTGCCATACACCGAGTTGCATTCTTCACGGGCATGCCCGCTCCCCCAAAGCCCCCCTGAACGCTATATATTCACAGCC > 2:1772439/1‑105 ACCAGCAAGCGCTCGCCACTGAATTTGATCAAGGTATTCCAGGTTGCATGCAGCAGGGCGGCAACCAGCACCAGAGATGTTGCCAACACGCCTTCTTGTCCTTATGGCTGTTCATGGCTGTGAATATATAGCGTTCAGGGGGGCTTTGGGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5665667‑5665825‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagcgggcGTGCCCGCGAACACCGGCAAAGCCGGTGCCATACACCGAGTTGCATTCTTCACGGGCATGCCCGCTCCCCCAAAGCCCCCCTGAACGCTATATATTCACAGCCATGAACAGCCATAAGGACAAGAAGGCGTGTTGGCAACATCTCTG < NC_002947/5665884‑5665738 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |