New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5817927 =	105 (1.130)	5 (0.060)	5/236	NT	5.1%	coding (83/1011 nt)	pilT	twitching motility protein
	?	NC_002947	5817979 =	88 (1.000)					coding (31/1011 nt)	pilT	twitching motility protein

TTGTCTGCTAGGGTGGACATGGATCGATGCCGGCAGCTGTGGGGTCTGCGGCATTCTACCTGCTTGAAGGCCTTTGGGGAGTCTTATGGATGTGACCGACCTGTTGGCCCGAGCTGTGGATGCGGGGGCTTCAGACCTGCACCTGGCGACGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5818082‑5817927 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggccaACAGGTCGGTCACATCCATAAGACTCCCCAAAGGCCTTCAAGCAGGTAGAATGCCGCAGACCCCACAGCTGCCGGCATCGATCCATGTCCACCCTAGCAGACAACCTTTCCGCGATTTCCGCCCGTATCGCCAGTGCTGCCCAGGCAGT  >  NC_002947/5817979‑5818127                                                                                                                                                                                                                                                                                                                   TTGTCTGCTAGGGTGGACATGGATCGATGCCGGCAGCTGTGGGGTCTGCGGCATTCTACCTGCTTGAAGGCCTTTGGGGAGTCTTATGGATGTGACCGACCTGTTGGCCCGAGCTGTGGATGCGGGGGCTTCAGACCTGCACCTGGCGAC                                                                                                                                                             >  1:1213930/1‑150    TCTGCTAGGGTGGACATGGATCGATGCCGGCAGCTTTGGGGTCTGCGGCATTCTACCTGCTTGAAGGCCTTTGGGGAGTCTTATGGATGTGACCGACCTGTTGGCCCGAGCTGTGGATGCGGGGGCTTCAGACCTGCACCTGGCGACGGG                                                                                                                                                          <  1:1830544/150‑1    TCTGCTAGGGTGGACATGGATCGATGCCGGCAGCTGTGGGGTCTGCGGCATTCTACCTGCTTGAAGGCCTTTGGGGAGTCTTATGGATGTGACCGACCTGTTGGCCCGAGCTGTGGATGCGGGGGCTTCAGACCTGCACCTGGCGACGGG                                                                                                                                                          >  1:1387309/1‑150     CTGCTAGGGTGGACATGGATCGATGCCGGCAGCTGTGGGGTCTGCGGCATTCTACCTGCTTGAAGGCCTTTGGGGAGTATTATGGATGTGACCGACCTGTTGNCCCGAGCTGTGGATGCGGGGGCTTCAGACCTGCACCTGGCGACGGGC                                                                                                                                                         <  1:318761/150‑1     CTGCTAGGGTGGACACGGATCGATGCCGGCAGCTGTGGGGTCTGCGGCATTCTACCTGCTTGAAGGCCTTTGGGGAGTCTTATGGATGTGACCGACCTGTTGGCCCGAGCTGTGGATGCGGGGGCTTCAGACCTGCACCTGGCGACGGGC                                                                                                                                                         <  2:2005632/150‑1                                        TGGGGTCTGCGGCATTCTACCTGCTTGAAGGCCTTTGGGGAGTCTTATAGATGTGACCGACCTGTTGGCCCGAGCTGTGGATGCGGGGGCTTCAGACCTGCACCTGGCGACGG                                                                                                                                                           <  1:558405/113‑1                                        TGGGGTCTGCGGCATTCTACCTGCTTGAAGGCCTTTGGGGAGTCTTATAGATGTGACCGACCTGTTGGCCCGAGCTGTGGATGCGGGGGCTTCAGACCTGCACCTGGCGACGG                                                                                                                                                           >  2:558405/1‑113                                                                                                   ACCTGTTGGCCCGAGCTGTGGATGCGGGGGCTTCAGACCTGCACCTGGCGACGGGCCAACAGGTCGGTCACATCCATAAGACTCCCCAAAGGCCTTCAAGCAGGTAGAATGCCGCAGACCCCACAGCTGCCGGCATCGATCCATGTCCAC                                                           >  2:1272338/1‑150                                                                                                           GCCCGAGCTGTGGATGCGGGGGCTTCAGACCTGCACCTGGCGACGGGCCAACAGGTCGGTCACATCCATAAGACTCCCCAAAGGCCTTCAAGCAGGTAGAATGCCGCAGACCCCACAGCTGCCGGCATCGATCCATGTCCACCCTAGCAG                                                   >  1:2284279/1‑150                                                                                                             CCGAGCTGTGGATGCGGGGGCTTCAGACCTGCACCTGGCGACGGGCCAACAGGTCGGTCACATCCATAAGACTCCCCAAAGGCCTTCAAGCAGGTAGAATGCCGCAGACCCCACAGCTGCCGGCATCGATCCATGTCCAC                                                           >  1:175114/1‑140                                                                                                             CCGAGCTGTGGATGCGGGGGCTTCAGACCTGCACCTGGCGACGGGCCAACAGGTCGGTCACATCCATAAGACTCCCCAAAGGCCTTCAAGCAGGTAGAATGCCGCAGACCCCACAGCTGCCGGCATCGATCCATGTCCAC                                                           <  2:175114/140‑1                                                                                                                                 CTTCAGACCTGCACCTGGCGACGGGCCAACAGGTCGGTCACATCCATAAGACTCCCCAAAGGCCTTCAAGCAGGTAGAATGCCGCAGACCCCACAGCTGCCGGCATCGATCCATGTCCACCCTAGCAGACAACCTTTCCGCGATTTCCGC                             <  2:2284279/150‑1                                                                                                                                                         GCCAACAGGTCGGTCACATCCATAAGACTCCCCAAAGGCCTTCAAGCAGGTAGAATGCCGCAGACCCCACAGCTGCCGGCATCGATCCATGTCCACCCTAGCAGACAACCTTTCCGCGATTTCCGCCCGTATCGCCAGTGCTGCCCAGGC     <  2:1414788/150‑1                                                                                                                                                            AACAGGTCGGTCACATCCATAAGACTCCCCAAAGGCCTTCAAGCAGGTAGAATGCCGCAGACCCCACAGCTGCCGGCATCGATCCATGTCCACCCTAGCAGACAACCTTTCCGCGATTTCCGCCCGTATCGCCAGTGCTGCCCAGGCAGT  >  1:391650/1‑150                                                                                                                                                                                                                                                                                                                   TTGTCTGCTAGGGTGGACATGGATCGATGCCGGCAGCTGTGGGGTCTGCGGCATTCTACCTGCTTGAAGGCCTTTGGGGAGTCTTATGGATGTGACCGACCTGTTGGCCCGAGCTGTGGATGCGGGGGCTTCAGACCTGCACCTGGCGACGGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5818082‑5817927 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggccaACAGGTCGGTCACATCCATAAGACTCCCCAAAGGCCTTCAAGCAGGTAGAATGCCGCAGACCCCACAGCTGCCGGCATCGATCCATGTCCACCCTAGCAGACAACCTTTCCGCGATTTCCGCCCGTATCGCCAGTGCTGCCCAGGCAGT  >  NC_002947/5817979‑5818127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.