New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 6050814 = | 104 (1.110) | 5 (0.060) | 5/238 | NT | 5.2% | coding (1620/2109 nt) | spoT | bifunctional (p)ppGpp synthase/hydrolase |
? | NC_002947 | 6050855 = | 84 (0.950) | coding (1661/2109 nt) | spoT | bifunctional (p)ppGpp synthase/hydrolase |
TGCCCTTGCCGGCCGACAGGTGGCCGACAATCGGGTCACCCGGGATCGGCGTGCAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGCG‑‑‑‑‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6050968‑6050814 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcg‑‑‑‑‑cCA‑GAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGT > NC_002947/6050855‑6051003 TGCCCTTGCCGGCCGACAGGTGGCCGACAATCGGGTCACCCGGGATTGGCGTGCAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGC < 2:1633080/150‑1 GCCCTTGCCGGCCGACAGGTGGCCGACAATCGGGTCACCCGGGATCGGCGTGCAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCG < 1:1286104/150‑1 GCCCTTGCCGGCCGACAGGTGGCCGACAATCGGGTCACCCGGGATCGGCGTGCAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCG < 1:2212437/150‑1 GCCCTTGCCGGCCGACAGGTGGCCGACAATCGGGTCACCCGGGATCGGCGTGCAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCG > 2:507750/1‑150 CCTTGCCGGCCGACAGGTGGCCGACAATCGGGTCACCCGGGATCGGCGTGCAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGC > 1:763004/1‑150 CTTGCCGGCCGACAGGTGGCCGACAATCGGGTCACCCGGGATCGGCGTGCAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGCG > 1:1060657/1‑150 TTGCCGGCCGACAGGTGGCCGACAATCGGGTCACCCGGGATCGGCGTGCAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGCG‑‑‑‑‑C < 1:335166/150‑1 CAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGC > 1:1682325/1‑100 CAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGC < 2:1682325/100‑1 CAGNGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGCGCGCGACCACGTAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTC > 2:1509562/1‑150 TTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGCG‑‑‑‑‑CCA‑GAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCC > 2:208595/1‑150 CCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGCG‑‑‑‑‑CCA‑GAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGA < 1:1700667/107‑1 CCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGCG‑‑‑‑‑CCA‑GAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGA > 2:1700667/1‑107 CAGCTGTTCGCCTTCGGCCGACAGCAGGCGGCGCGCGACCACGTAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAG < 1:1509562/150‑1 CG‑‑‑‑‑CCA‑GAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCA < 1:1180481/150‑1 CCA‑GAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGT < 1:1287949/150‑1 TGCCCTTGCCGGCCGACAGGTGGCCGACAATCGGGTCACCCGGGATCGGCGTGCAGCACTTGGCGTAGCTGAGCACCAGGCCTTCGGTGCCGCGGATCGCCAGTGGGCCTTCTGGCGCCGGCAGCTGTTCGCCTTCGGCCGACAGCAGGCGGCG‑‑‑‑‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6050968‑6050814 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcg‑‑‑‑‑cCA‑GAAGGCCCACTGGCGATCCGCGGCACCGAAGGCCTGGTGCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGTGACCCGATTGTCGGCCACCTGTCGGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGCAACATCAGT > NC_002947/6050855‑6051003 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |