| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6141509 | 106 (1.140) | 6 (0.070) | 4/232 | NT | 5.5% | coding (1189/3159 nt) | cusA | CzcA family RND family copper transporter |
| ? | NC_002947 | = 6141531 | 107 (1.240) | coding (1211/3159 nt) | cusA | CzcA family RND family copper transporter | |||||
TTCATCGTGGTCGCACTGGTGTGTGCCGCCTTCCTGTGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6141356‑6141509‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcatcgACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGAGCGCGATCAGTACTCCCACCGGCAATGACACGATTGCAACCAGCGACGAGCGCAGGTGCCACAGGAAGGC < NC_002947/6141531‑6141383 TTCATCGTGGTCGCACTGGTGTGTGCCGCCTTCCTGTGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGC > 2:1230456/1‑150TTCATCGTGGTCGCACTGGTGTGTGCCGCCTTCCTGTGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGC > 1:273837/1‑150 CATCGTGGTCGCACTGGTGTGTGCCGCCTTCCTGTGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCAT > 2:461683/1‑150 CATCGTGGTCGCACTGGTGTGTGCCGCCTTCCTGTGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCAT > 2:2394958/1‑150 ATCGTGGTCGCACTGGTGTGTGCCGCCTTCCTGTGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCATC > 2:977596/1‑150 ATCGTGGTCGCACTGGTGTGTGCCGCCTTCCTGTGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCATC > 2:237895/1‑150 ATCGTGGTCGCACTGGTGTGTGCCGCCTTCCTGTGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCATC > 2:1080001/1‑150 ATCGTGGTCGCACTGGTGTGTGCCGCCTTCCTGTGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCATC > 1:383118/1‑150 ATCGTGGTCGCACTGGTGTGTGCCGCCTTCCTGTGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCATC > 1:549944/1‑150 TCGTGGTCGCACTGGTGTGTGCCGCCTTCCTGTGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCATCG > 1:1340492/1‑150 GTGGTCGCACTGGTGTGTGCCGCCTTCCTGTGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCATCGAC < 1:2394958/150‑1 CCGCCTTCCTGTGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCATCGACCATTGCGCCAATGGCG‑‑ATG > 2:1369437/1‑150 TTCCTGTGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGAT < 1:1369437/150‑1 TTCCTGTGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑AGAg < 1:461683/150‑2 GCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGAT < 1:1979190/120‑1 GCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGAT > 2:1979190/1‑120 GCCAACATCATGTCTCTGGGCGGCATCG‑CCAT‑‑CGCCATTGGCGCAATGGTCGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGAGCGCGATCAGTACTCCCACCGGCAATGACACGATTGCAACCAG < 2:645528/150‑1 GCGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGCCCAGAGACATAAAGTTTGTGTTGATGCCCTGGTGCCGCATGATGATGAGCGCGATCAGTACTCCCACCGGCAATGACACGATTGCAACCAGCGACGAGCGCAGGTGCCAC < 2:1883182/150‑1 CGGCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGAGCGCGATCAGTACTCCCACCGGCAATGACACGATTGCAACCAGCGACGAGCGCAGGTGCCACA < 1:983376/150‑1 GCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGAGCGCGATCAGTACTCCCACCGGCAATGACACGATTGCAACCAGCGACGAGCGCAGGTGCCACAGG > 2:1340492/1‑150 GCATCGACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGAGCGCGATCAGTACTCCCACCGGCAATGACACGATTGCAACCAGCGACGAGCGCAGGTGCCACAGG > 2:273837/1‑150 TCGACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGAGCGCGATCAGTACTCCCACCGGCAATGACACGATTGCAACCAGCGACGAGCGCAGGTGCCACAGGAAG < 2:67410/150‑1 TCGACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGAGCGCGATCAGTACACCCACAGGCAATGACACGGTTGCAAGCAGCGACGAGCGCAGGTGCCACAGGAAG > 2:744527/1‑150 TCGACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGAGCGCGATCAGTA < 2:1016604/94‑1 TCGACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGAGCGCGATCAGTA > 1:1016604/1‑94 GACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGAGCGCGATCAGTACTCCCACCGGCAATGAC < 2:297287/109‑1 GACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGAGCGCGATCAGTACTCCCACCGGCAATGAC > 1:297287/1‑109 GACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTAGTGCCGCATGATGATGAGCGCGATCAGTACTCCCACCGGCAATGACACGATTGCAACCAGCGACGAGCGCAGGTGCCACAGGAAGGC < 2:263620/150‑1 GACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGCCCAGAGACATGATGTTGGCGTTG > 2:1780544/1‑55 GACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGCCCAGAGACATGATGTTGGCGTTG < 1:1780544/55‑1 TTCATCGTGGTCGCACTGGTGTGTGCCGCCTTCCTGTGGCACCTGCGCTCGTCGCTGGTTGCAATCGTGTCATTGCCGGTGGGAGTACTGATCGCGCTCATCATCATGCGGCACCAGGGCATCAACGCCAACATCATGTCTCTGGGCGGCATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6141356‑6141509‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcatcgACCATTGCGCCAATGGCG‑‑ATGG‑CGATGCCGCCCAGAGACATGATGTTGGCGTTGATGCCCTGGTGCCGCATGATGATGAGCGCGATCAGTACTCCCACCGGCAATGACACGATTGCAACCAGCGACGAGCGCAGGTGCCACAGGAAGGC < NC_002947/6141531‑6141383 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |