New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4675357 = | 63 (0.680) | 10 (0.130) | 9/204 | NT | 22.4% | intergenic (+10/+94) | PP_4137/chrR | outer membrane siderophore receptor/chromate reductase |
? | NC_002947 | 4675415 = | 18 (0.240) | intergenic (+68/+36) | PP_4137/chrR | outer membrane siderophore receptor/chromate reductase |
CGACGCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCG > NC_002947/4675266‑4675560 | cgacgCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCt < 1:572095/150‑1 (MQ=255) cgacgCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCt > 1:55698/1‑150 (MQ=255) gacgCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCta > 2:1126383/1‑149 (MQ=255) gcAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCg < 2:542982/149‑1 (MQ=255) cAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGt < 1:711066/150‑1 (MQ=255) ttCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCAcagca > 2:2011344/1‑150 (MQ=255) gggCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAggg < 2:55698/150‑1 (MQ=255) aaGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCa < 2:285266/150‑1 (MQ=255) ttGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGc < 2:1682931/150‑1 (MQ=255) tGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGcc < 2:2414614/150‑1 (MQ=255) gtgtATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGGTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGt > 1:438734/1‑150 (MQ=255) tgtATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGGGGGCGCGGGTTTACCCGCGTATGCGTCATTGAACTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGt‑t < 2:985574/150‑1 (MQ=255) cGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTc > 1:90206/1‑150 (MQ=255) ggTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCAcc < 2:914073/150‑1 (MQ=255) ggTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCAcc < 1:2011344/150‑1 (MQ=255) ttCCTACAGCTTCCGTGGACGTGTGGGCGCGGGTTTACCCGCGAATGCGTCA‑GACGTGTGCTCTTCCGATCTTGTTATAAACCCGCTCCGACACACGGGAGTTGCCCAGCAGGATTAGTGGTTCAGACCGCCCTGT‑TCAACTTCACCCAt < 1:1126383/150‑1 (MQ=255) cTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGAc < 1:226268/150‑1 (MQ=255) cGCTTACGGGTGGGCGCTGGTTTACCCGCGAATGCTTCATTTAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACTCATGACGCAAACCTGt < 2:438734/150‑1 (MQ=38) tGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGa > 1:592135/1‑150 (MQ=255) GCGGGTTTACCCGCGAATGCGGCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGt‑t < 2:317880‑M1/109‑1 (MQ=255) GCGGGTTTACCCGCGAATGCGGCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGt‑t > 1:317880‑M1/1‑109 (MQ=255) GGTTTACCCGCGAATGCGTCGGCAAATTCAA‑TGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAAGTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGa < 2:1486197‑M1/150‑1 (MQ=255) GTTTACCCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCAt > 2:912583‑M1/1‑118 (MQ=255) GTTTACCCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCAt < 1:912583‑M1/118‑1 (MQ=255) acccgcgaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAgggg > 2:1572529‑M2/51‑85 (MQ=255) acccgcgaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAgggg < 1:1572529‑M2/35‑1 (MQ=255) CCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGca > 1:2404861‑M1/1‑68 (MQ=255) CCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGca < 2:2404861‑M1/68‑1 (MQ=255) CCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAAc < 1:2126879‑M1/145‑1 (MQ=255) CCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAAc > 2:2126879‑M1/1‑145 (MQ=255) CCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGt < 1:1941123‑M1/148‑1 (MQ=255) CCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGt > 2:1941123‑M1/1‑148 (MQ=255) ctgcgaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTcg > 1:1512302‑M2/49‑150 (MQ=255) ccgngaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTcg > 2:1500226‑M2/49‑150 (MQ=255) ccgcgaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGG‑TCAACTTCACCCATGACGCAAACTTGTCGACAAACGCCTGCAAGAACGGTcg > 1:603798‑M2/49‑150 (MQ=255) cgcgaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑ACAACTGCACCCAAGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTcgc > 2:521611‑M2/48‑150 (MQ=255) gaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTcgc > 2:1757354‑M2/45‑147 (MQ=255) gaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTcgc < 1:1757354‑M2/103‑1 (MQ=255) gaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGNGTc < 2:1512302‑M2/106‑1 (MQ=255) aTGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGAGTAGGGGTT‑AGCTGGTGGGCTAAAAACAGTTCGTATATCGCAAACCTGTCGACAAACGCCTGCAAGAACGGGCGCGTCtt > 1:1474938/1‑150 (MQ=16) TGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTg > 2:90206‑M1/1‑150 (MQ=255) GTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCa < 1:228774‑M1/150‑1 (MQ=255) aTTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTg > 1:1893101/1‑150 (MQ=255) gcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTATGTCTGCCGTGT‑TCATTGCCACTCGTGTCGTAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGa < 1:1486197‑M2/116‑1 (MQ=255) cGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGa > 1:2189065/1‑150 (MQ=255) acgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAAt > 2:51715‑M2/23‑150 (MQ=255) cattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGc < 1:1586614‑M2/91‑1 (MQ=255) cattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGc > 2:1586614‑M2/20‑110 (MQ=255) ggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTg < 2:1925980‑M2/121‑1 (MQ=255) ggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTg > 1:1925980‑M2/12‑132 (MQ=255) ggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAg < 2:2189065‑M2/139‑1 (MQ=255) gtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGc < 1:51715‑M2/140‑1 (MQ=255) aacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGcc < 2:1959367‑M2/46‑1 (MQ=255) aacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGcc > 1:1959367‑M2/8‑53 (MQ=255) cccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCGCTGT‑TCAACTTCGCCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTAAGCTTGCCCGAAGCGTCGAACAAGCTcgcc > 2:1323227‑M2/6‑150 (MQ=255) cccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTcgc < 2:1417199‑M2/103‑1 (MQ=255) cccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTcgc > 1:1417199‑M2/6‑108 (MQ=255) ccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGa < 1:2075447‑M2/116‑1 (MQ=255) ccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGa > 2:2075447‑M2/5‑120 (MQ=255) ccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTcgccg > 1:2317955‑M2/5‑150 (MQ=255) | CGACGCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGC‑CGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGT‑TCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCG > NC_002947/4675266‑4675560 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |