New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 4675357 =63 (0.680)10 (0.130) 9/204 NT 22.4% intergenic (+10/+94) PP_4137/chrR outer membrane siderophore receptor/chromate reductase
?NC_002947 4675415 = 18 (0.240)intergenic (+68/+36) PP_4137/chrR outer membrane siderophore receptor/chromate reductase

CGACGCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCG  >  NC_002947/4675266‑4675560
                                                                                                                                                      |                                                                                                                                                  
cgacgCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCt                                                                                                                                                    <  1:572095/150‑1 (MQ=255)
cgacgCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCt                                                                                                                                                    >  1:55698/1‑150 (MQ=255)
 gacgCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCta                                                                                                                                                   >  2:1126383/1‑149 (MQ=255)
              gcAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCg                                                                                                                                      <  2:542982/149‑1 (MQ=255)
               cAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGt                                                                                                                                     <  1:711066/150‑1 (MQ=255)
                        ttCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCAcagca                                                                                                                            >  2:2011344/1‑150 (MQ=255)
                                 gggCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAggg                                                                                                                   <  2:55698/150‑1 (MQ=255)
                                      aaGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCa                                                                                                              <  2:285266/150‑1 (MQ=255)
                                            ttGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGc                                                                                                        <  2:1682931/150‑1 (MQ=255)
                                             tGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGcc                                                                                                       <  2:2414614/150‑1 (MQ=255)
                                                 gtgtATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGGTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGt                                                                                                   >  1:438734/1‑150 (MQ=255)
                                                  tgtATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGGGGGCGCGGGTTTACCCGCGTATGCGTCATTGAACTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGtt                                                                                                 <  2:985574/150‑1 (MQ=255)
                                                         cGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTc                                                                                          >  1:90206/1‑150 (MQ=255)
                                                            ggTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCAcc                                                                                       <  2:914073/150‑1 (MQ=255)
                                                            ggTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCAcc                                                                                       <  1:2011344/150‑1 (MQ=255)
                                                               ttCCTACAGCTTCCGTGGACGTGTGGGCGCGGGTTTACCCGCGAATGCGTCAGACGTGTGCTCTTCCGATCTTGTTATAAACCCGCTCCGACACACGGGAGTTGCCCAGCAGGATTAGTGGTTCAGACCGCCCTGTTCAACTTCACCCAt                                                                                    <  1:1126383/150‑1 (MQ=255)
                                                                  cTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGAc                                                                                 <  1:226268/150‑1 (MQ=255)
                                                                            cGCTTACGGGTGGGCGCTGGTTTACCCGCGAATGCTTCATTTAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACTCATGACGCAAACCTGt                                                                       <  2:438734/150‑1 (MQ=38)
                                                                               tGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGa                                                                    >  1:592135/1‑150 (MQ=255)
                                                                                           GCGGGTTTACCCGCGAATGCGGCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGtt                                                                                                 <  2:317880‑M1/109‑1 (MQ=255)
                                                                                           GCGGGTTTACCCGCGAATGCGGCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGtt                                                                                                 >  1:317880‑M1/1‑109 (MQ=255)
                                                                                              GGTTTACCCGCGAATGCGTCGGCAAATTCAATGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAAGTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGa                                                     <  2:1486197‑M1/150‑1 (MQ=255)
                                                                                               GTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCAt                                                                                    >  2:912583‑M1/1‑118 (MQ=255)
                                                                                               GTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCAt                                                                                    <  1:912583‑M1/118‑1 (MQ=255)
                                                                                                    acccgcgaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAgggg                                                                                                                  >  2:1572529‑M2/51‑85 (MQ=255)
                                                                                                    acccgcgaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAgggg                                                                                                                  <  1:1572529‑M2/35‑1 (MQ=255)
                                                                                                     CCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGca                                                                                                                                 >  1:2404861‑M1/1‑68 (MQ=255)
                                                                                                     CCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGca                                                                                                                                 <  2:2404861‑M1/68‑1 (MQ=255)
                                                                                                     CCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAAc                                                   <  1:2126879‑M1/145‑1 (MQ=255)
                                                                                                     CCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAAc                                                   >  2:2126879‑M1/1‑145 (MQ=255)
                                                                                                     CCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGt                                                <  1:1941123‑M1/148‑1 (MQ=255)
                                                                                                     CCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGt                                                >  2:1941123‑M1/1‑148 (MQ=255)
                                                                                                      ctgcgaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTcg                                              >  1:1512302‑M2/49‑150 (MQ=255)
                                                                                                      ccgngaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTcg                                              >  2:1500226‑M2/49‑150 (MQ=255)
                                                                                                      ccgcgaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGGTCAACTTCACCCATGACGCAAACTTGTCGACAAACGCCTGCAAGAACGGTcg                                              >  1:603798‑M2/49‑150 (MQ=255)
                                                                                                       cgcgaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTACAACTGCACCCAAGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTcgc                                             >  2:521611‑M2/48‑150 (MQ=255)
                                                                                                          gaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTcgc                                             >  2:1757354‑M2/45‑147 (MQ=255)
                                                                                                          gaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTcgc                                             <  1:1757354‑M2/103‑1 (MQ=255)
                                                                                                          gaatgcgtcggcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGNGTc                                          <  2:1512302‑M2/106‑1 (MQ=255)
                                                                                                           aTGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGAGTAGGGGTTAGCTGGTGGGCTAAAAACAGTTCGTATATCGCAAACCTGTCGACAAACGCCTGCAAGAACGGGCGCGTCtt                                        >  1:1474938/1‑150 (MQ=16)
                                                                                                            TGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTg                                       >  2:90206‑M1/1‑150 (MQ=255)
                                                                                                               GTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCa                                    <  1:228774‑M1/150‑1 (MQ=255)
                                                                                                                  aTTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTg                                 >  1:1893101/1‑150 (MQ=255)
                                                                                                                    gcaaattcaatgacgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTATGTCTGCCGTGTTCATTGCCACTCGTGTCGTAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGa                                <  1:1486197‑M2/116‑1 (MQ=255)
                                                                                                                              cGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGa                      >  1:2189065/1‑150 (MQ=255)
                                                                                                                                acgcattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAAt                    >  2:51715‑M2/23‑150 (MQ=255)
                                                                                                                                   cattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGc                                                         <  1:1586614‑M2/91‑1 (MQ=255)
                                                                                                                                   cattcgcgggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGc                                                         >  2:1586614‑M2/20‑110 (MQ=255)
                                                                                                                                           ggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTg                           <  2:1925980‑M2/121‑1 (MQ=255)
                                                                                                                                           ggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTg                           >  1:1925980‑M2/12‑132 (MQ=255)
                                                                                                                                           ggtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAg         <  2:2189065‑M2/139‑1 (MQ=255)
                                                                                                                                            gtaaacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGc        <  1:51715‑M2/140‑1 (MQ=255)
                                                                                                                                               aacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGcc                                                                                                       <  2:1959367‑M2/46‑1 (MQ=255)
                                                                                                                                               aacccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGcc                                                                                                       >  1:1959367‑M2/8‑53 (MQ=255)
                                                                                                                                                 cccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCGCTGTTCAACTTCGCCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTAAGCTTGCCCGAAGCGTCGAACAAGCTcgcc   >  2:1323227‑M2/6‑150 (MQ=255)
                                                                                                                                                 cccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTcgc                                             <  2:1417199‑M2/103‑1 (MQ=255)
                                                                                                                                                 cccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTcgc                                             >  1:1417199‑M2/6‑108 (MQ=255)
                                                                                                                                                  ccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGa                                <  1:2075447‑M2/116‑1 (MQ=255)
                                                                                                                                                  ccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGa                                >  2:2075447‑M2/5‑120 (MQ=255)
                                                                                                                                                  ccgcTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTcgccg  >  1:2317955‑M2/5‑150 (MQ=255)
                                                                                                                                                      |                                                                                                                                                  
CGACGCCGGCCAGGACAATGCCCGTTCGACACCGGGCGAAGGATTTGGCGTGTATGCCGGGGTTTCCTACAGCTTCCGCTGACGGGTGGGCGCGGGTTTACCCGCGAATGCGTCATTGAATTTGCCGACGCATTCGCGGGTAAACCCGCTCCTACACAGGGGCGTTGCACAGCAGGATTAGGGGTTCAGACCGCCCTGTTCAACTTCACCCATGACGCAAACCTGTCGACAAACGCCTGCAAGAACGGTCGCGTCTTGTCATTGAGCTTGCCCGAATCCTCGAACAAGCTCGCCG  >  NC_002947/4675266‑4675560

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.