New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 554695085 (0.910)6 (0.070) 6/240 NT 6.5% coding (2152/2574 nt) rnr exoribonuclease R
?NC_002947 = 5546982 91 (1.020)coding (2120/2574 nt) rnr exoribonuclease R

Only 100 of 116 total aligned reads displayed.

GCGGCCGATCGGTGCGGCGAGGGTCTTTTCCGACACTTCGAAGTCGATCTTGCGCTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCAGTGATCACACCCGGGAAGGTCTCGCCCACGCGGTCTTTCATGAACTC  >  NC_002947/5546834‑5547130
                                                                                                                                                    |                                                                                                                                                    
gCGGCCGATCGGTGCGGCGAGGGTCTTTTCCGACACTTCGAAGTCGATCTTGCGCTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGCGCGCTCGCCGGCCAGGCGATGGTGTACCGg                                                                                                                                                     >  1:317949‑M2/1‑149 (MQ=255)
 cGGCCGATCGGTGCGGCGAGGGTCTTTTCCGACACTTCCATGGCGATCTTGCGCTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGgg                                                                                                                                                    >  1:23930‑M2/1‑148 (MQ=255)
  ggCCGATCGGTGCGGCAAGGGTCTTTTCCGACACTTCGAAGTCGATCTTGCGCTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGggt                                                                                                                                                   >  2:130734‑M2/1‑147 (MQ=255)
    ccGATCGGTGCGGCGAGGGTCTTTTCCGACACTTCGAAGTCGATCTTGCGCTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGggtcg                                                                                                                                                 <  1:1187655‑M2/150‑6 (MQ=255)
            tGCGGCGAGGGTCTTTTCCGACACTTCGAAGTCGATCTTGCGCTCATCAAGGTCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGgta                                                                                                                                         <  1:145127/150‑1 (MQ=255)
             gcggcgAGGGTCTTTTCCGACACTTCGAAGTCGATCTTGCGCTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGgtag                                                                                                                                        <  2:1477704/150‑1 (MQ=255)
                     ggTCTTTTCCGACACTTCGAAGTCGATCTTGCGCTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTCCCGGGTCGAAGTGGTAGTAGTCAcc                                                                                                                                >  1:528567/1‑150 (MQ=255)
                         ttttCCGACACTTCGAAGTCGATCTTGCGCTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGc                                                                                                                            >  1:857358/1‑150 (MQ=255)
                               gACACTTCGAAGTCGATCTTGCGCTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCa                                                                                                                      >  1:2321899/1‑150 (MQ=255)
                                      cGAAGTCGATCTTGCGCTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGt                                                                                                               <  2:773280/150‑1 (MQ=255)
                                       gAAGTCGATCTTGCGCTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTg                                                                                                              <  2:2416744/150‑1 (MQ=255)
                                         aGTCGATCTTGCGCTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGNGCa                                                                                                            <  2:1508797/150‑1 (MQ=255)
                                          gTCGATCTTGCGCTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGgtagta                                                                                                                                      >  1:328334/1‑123 (MQ=255)
                                          gTCGATCTTGCGCTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGgtagta                                                                                                                                      <  2:328334/123‑1 (MQ=255)
                                             gATCTTGCGCTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTGGTCACCCGGCAACGCACTGACGTGCACCaa                                                                                                        >  2:2133525/1‑150 (MQ=255)
                                             gATCTTGCGCTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCaa                                                                                                        >  1:244833/1‑150 (MQ=255)
                                             gATCTTGCGCTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCaa                                                                                                        >  1:732250/1‑150 (MQ=255)
                                               tCTTGCGCTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGCAAGGCAGCAACGCACTGACGTGCACCAAGc                                                                                                      >  1:1182328/1‑150 (MQ=255)
                                                cgtGCGCTCATCAAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGGACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGcc                                                                                                     <  2:295598/148‑1 (MQ=255)
                                                 ttGCGCTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGccc                                                                                                    >  2:1484738/1‑150 (MQ=255)
                                                     gcTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTa                                                                                                >  2:1083310/1‑150 (MQ=255)
                                                       tCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACa                                                                                              >  1:2134330/1‑150 (MQ=255)
                                                       tCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACa                                                                                              <  2:1981896/150‑1 (MQ=255)
                                                          tCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGaa                                                                                                                                               <  2:195168/98‑1 (MQ=255)
                                                          tCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGaa                                                                                                                                               >  1:195168/1‑98 (MQ=255)
                                                          tCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAg                                                                                           >  1:783489/1‑150 (MQ=255)
                                                           ccAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGa                                                                                          >  1:1627568/1‑150 (MQ=255)
                                                           ccAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGa                                                                                          >  2:1867121/1‑150 (MQ=255)
                                                             aGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGggtcg                                                                                                                                                 <  1:595181‑M2/93‑6 (MQ=255)
                                                             aGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGggtcg                                                                                                                                                 >  2:595181‑M2/1‑88 (MQ=255)
                                                              gATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGatat                                                                                       <  1:1083310/150‑1 (MQ=255)
                                                                tCAACACGCACGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCg                                                                                     <  1:1091373/150‑1 (MQ=255)
                                                                  aaCACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTg                                                                                                              <  1:1539349/123‑1 (MQ=255)
                                                                  aaCACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTg                                                                                                              >  2:1539349/1‑123 (MQ=255)
                                                                  aaCACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGt                                                                                   >  1:176665/1‑150 (MQ=255)
                                                                  aaCACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGt                                                                                   <  1:511007/150‑1 (MQ=255)
                                                                       gCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCa                                                                                                            >  1:854179/1‑120 (MQ=255)
                                                                       gCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCa                                                                                                            <  2:854179/120‑1 (MQ=255)
                                                                         aTGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACGGGGTCGAAGAGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACAGAGATATCGGTCAGTTcg                                                                            >  1:1475548/1‑150 (MQ=255)
                                                                         aTGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTATATAGATATCGGTCAGTTcg                                                                            >  1:72428/1‑150 (MQ=255)
                                                                          tGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTcga                                                                           <  2:576159/150‑1 (MQ=255)
                                                                              cTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGtagtag                                                                                                                                     <  2:587572/88‑1 (MQ=255)
                                                                              cTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGtagtag                                                                                                                                     >  1:587572/1‑88 (MQ=255)
                                                                              cTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGaa                                                                       >  1:2146234/1‑150 (MQ=255)
                                                                               ttGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAg                                                                                                       >  1:2192656/1‑117 (MQ=255)
                                                                                  aCTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGAc                                                                                                                 <  2:1394218/104‑1 (MQ=255)
                                                                                  aCTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAgg                                                                   <  2:2321899/150‑1 (MQ=255)
                                                                                   cTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGc                                                                  <  2:2134330/150‑1 (MQ=255)
                                                                                    ttCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTg                                                                                                                                            >  2:1317273/1‑75 (MQ=255)
                                                                                    ttCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTg                                                                                                                                            <  1:1317273/75‑1 (MQ=255)
                                                                                    ttCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTa                                                                                                <  1:397766/119‑1 (MQ=255)
                                                                                    ttCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTa                                                                                                >  2:397766/1‑119 (MQ=255)
                                                                                    ttCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGcc                                                                 >  2:295684/1‑150 (MQ=255)
                                                                                    ttCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGCCTGTTCGTCGAActgacc                                                                 >  2:489497/1‑145 (MQ=255)
                                                                                       gATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGgta                                                                                                                                         >  1:1013678/1‑75 (MQ=255)
                                                                                       gATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGgta                                                                                                                                         <  2:1013678/75‑1 (MQ=255)
                                                                                         tGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAAc                                                            <  1:2265012/150‑1 (MQ=255)
                                                                                           gtgtCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCg                                                          <  1:1867121/150‑1 (MQ=255)
                                                                                             gtCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGt                                                        >  2:1571037/1‑150 (MQ=255)
                                                                                                gCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCAc                                                     >  2:1432576/1‑150 (MQ=255)
                                                                                                    aaGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCa                                                 <  2:1406201/150‑1 (MQ=255)
                                                                                                         gAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGAc                                                                                                                 <  2:1910252/81‑1 (MQ=255)
                                                                                                         gAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGAc                                                                                                                 >  1:1910252/1‑81 (MQ=255)
                                                                                                         gAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCa                                                                                                            >  1:1063881/1‑86 (MQ=255)
                                                                                                         gAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCa                                                                                                            <  2:1063881/86‑1 (MQ=255)
                                                                                                         gAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCctc                                                                                                  >  2:22183/1‑96 (MQ=255)
                                                                                                         gAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCctc                                                                                                  <  1:22183/96‑1 (MQ=255)
                                                                                                          aaGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCAGTGATc                                           <  1:1533232/150‑1 (MQ=255)
                                                                                                              tGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCAGTGATCacac                                       >  1:2213553/1‑150 (MQ=255)
                                                                                                              tGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGGCGAAGTGATAGTGGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCAGTGATCacac                                       >  1:1238065/1‑150 (MQ=255)
                                                                                                               gCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGggtcgcagcttccgcttgggcgacaccatcgaagtcaaggtcatgcgtgttgatctgga                                                                                           >  1:1658409‑M2/1‑38 (MQ=255)
                                                                                                               gCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGggtcgcagcttccgcttgggcgacaccatcgaagtcaaggtcatgcgtgttgatctgga                                                                                           <  2:1658409‑M2/97‑60 (MQ=255)
                                                                                                                cGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGggtcgcagcttccgcttgggcgacaccatcgaagtcaaggtcatgcgtgttgatctggatgagcgcaagatcgacttcgaagtgtcgga                                                             >  2:381340‑M2/1‑37 (MQ=255)
                                                                                                                cGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCAGTGATCACAccc                                     >  1:1647789/1‑150 (MQ=255)
                                                                                                                    cGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGAACAGGTCGACGAACAGGCCGAAACCGGTCACCGCAGTGATCCCACCCGGGa                                 >  1:144659/1‑150 (MQ=255)
                                                                                                                     ggTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTCGTCACCCCACAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCAGTGATCACACCCGGGaa                                <  1:1743509/150‑1 (MQ=255)
                                                                                                                     ggTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGGCACCGCAGTGATCACACCCGGGaa                                <  2:1627568/150‑1 (MQ=255)
                                                                                                                        gcgcTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCAGTGATCACACCCGGGAAGGt                             <  2:176665/150‑1 (MQ=255)
                                                                                                                          gcTCGCCGGCCAGGCGATGGTGTACCGgtcgcagcttccgcttgggcgacaccatcgaagtcaaggtcatgcgtgttgatctggatgagcgcaagatcgacttcgaa                                                                      <  2:2052487‑M2/107‑81 (MQ=255)
                                                                                                                          gcTCGCCGGCCAGGCGATGGTGTACCGgtcgcagcttccgcttgggcgacaccatcgaagtcaaggtcatgcgtgttgatctggatgagcgcaagatcgacttcgaa                                                                      >  1:2052487‑M2/1‑27 (MQ=255)
                                                                                                                           cTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGACACCGGTCACCGCAGTGATCACACCCGGGAAGGtctc                          >  1:1195752/1‑150 (MQ=255)
                                                                                                                            tCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGat                                                                                         <  1:2382959/86‑1 (MQ=255)
                                                                                                                            tCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGat                                                                                         >  2:2382959/1‑86 (MQ=255)
                                                                                                                            tCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCAGTGATCACACCCGGGAAGGTCTCg                         >  1:1284365/1‑150 (MQ=255)
                                                                                                                            tCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCGGCACATAGATATCGGTCAGTTCGACCAACAGGCCGAAACCGGTCACCGCAGTGATCACACCCGGGAAGGTCTCg                         >  1:1115282/1‑150 (MQ=255)
                                                                                                                             cGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCAGTGATCACACCCGGGAAGGTCTCGc                        <  1:295684/150‑1 (MQ=255)
                                                                                                                              gCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCAGTGATCACACCCGGGAAGGTCTCGcc                       >  1:2339175/1‑150 (MQ=255)
                                                                                                                               ccGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCAGTGATCACACCCGGGAAGGTCTCGccc                      >  2:2330768/1‑150 (MQ=255)
                                                                                                                                cGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCAGTGATCACACCCGGGAAGGTCTCGCCCa                     <  1:1432576/150‑1 (MQ=255)
                                                                                                                                    cAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCAGTGATCACACCCGGGAAGGTCTCGCCCAcgcg                 >  1:1009632/1‑150 (MQ=255)
                                                                                                                                         gATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAg                                                                    <  2:116571/94‑1 (MQ=255)
                                                                                                                                             gtgtACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCAGTGAt                                            <  1:1138985/114‑1 (MQ=255)
                                                                                                                                             gtgtACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCAGTGAt                                            >  2:1138985/1‑114 (MQ=255)
                                                                                                                                                tACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTc                                                                                  <  2:1606773/73‑1 (MQ=255)
                                                                                                                                                tACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTc                                                                                  >  1:1606773/1‑73 (MQ=255)
                                                                                                                                                  ccGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCAGTGATCACACCCGGGAAGGTCTCGCCCACGCGGTCTTTCATGAACt   >  1:800656/1‑150 (MQ=255)
                                                                                                                                                   cGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTGGACATGCATATCGGTCAGTGCTACGAACAGGCCGAAACCGGTCACCGCAGTGATCGCACCCGGGAAGGTCTCGCCCACGCGGGCTTTCCTGAACTc  >  1:535594/1‑150 (MQ=255)
                                                                                                                                                   cGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCAGTGATCACACCCGGGAAGGTCTCGCCCACGCGGTCTTTCATGAACTc  >  1:1920272/1‑150 (MQ=255)
                                                                                                                                                   cGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCAGTGATCACACCCGGGAAGGTCTCGCCCACGCGGTCTTTCATGAACTc  <  2:732250/150‑1 (MQ=255)
                                                                                                                                                   cGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCAATGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCAGTGATCACACCCGGGAAGGTCTCGCCCACGCGGTCTTTCATGAACTc  <  2:2408305/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
GCGGCCGATCGGTGCGGCGAGGGTCTTTTCCGACACTTCGAAGTCGATCTTGCGCTCATCCAGATCAACACGCATGACCTTGACTTCGATGGTGTCGCCCAAGCGGAAGCTGCGACCGGTGCGCTCGCCGGCCAGGCGATGGTGTACCGGGTCGAAGTGGTAGTAGTCACCCGGCAACGCACTGACGTGCACCAAGCCCTCTACATAGATATCGGTCAGTTCGACGAACAGGCCGAAACCGGTCACCGCAGTGATCACACCCGGGAAGGTCTCGCCCACGCGGTCTTTCATGAACTC  >  NC_002947/5546834‑5547130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.