New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 395980 | 32 (0.740) | 8 (0.200) | 8/236 | NT | 19.8% | intergenic (+159/+45) | fdhA/PP_0329 | formaldehyde dehydrogenase/hypothetical protein |
? | NC_002947 | = 395987 | 35 (0.870) | intergenic (+166/+38) | fdhA/PP_0329 | formaldehyde dehydrogenase/hypothetical protein |
AGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/395824‑395980 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtggccct‑TCGCTCC‑AGGGCCACTCACCAGGCTTCGGAACTGATGAGGTATGTGCGGGCGGCGCTCGACTTCAAAAGCGATGAAAGGCTTATGACAAGCACCTCCGGCCGAGATGTCTTATCAGAATGGACAAAAAGCCCCTCGATGCGAGGGGCTC < NC_002947/395987‑395839 AGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAG > 2:908847/1‑150 GTCGAGTAAAAAGAGACCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGG > 2:229980/1‑150 GAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTGCCGAAGCCTGGTGAGTGGCCC > 1:206773/1‑150 TCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑TCGCTCC‑AGGGCCA > 1:35064/1‑82 TCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑TCGCTCC‑AGGGCCA < 2:35064/82‑1 TTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑TCGCTCC‑AGGGCCACTCACCA > 1:560064/1‑82 TTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑TCGCTCC‑AGGGCCACTCACCA < 2:560064/82‑1 TCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑TCGCTCC‑AGGGCCACTCACCAGGCTTCGGAACTGATGAGGTATGTGCGGGCGGCGCTCGACTTCAAAAGCGATGAAAGGCTTATGACAA > 1:350892/1‑120 TCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑TCGCTCC‑AGGGCCACTCACCAGGCTTCGGAACTGATGAGGTATGTGCGGGCGGCGCTCGACTTCAAAAGCGATGAAAGGCTTATGACAA < 2:350892/120‑1 TTCCGAAGCCTGGTGGGTGGCCCTGGAGC‑GA‑AGGGCCACTCACCAGGCTTCGGAACTGATGAGGTATGTGCGGGCGGCGCTCGACTTCAAAAGCGATGAAAGGCTTATGACAA > 1:143949/1‑113 TTCCGAAGCCTGGTGGGTGGCCC‑‑TGGAGCGAAGGGCCACTCACCAGGCTTCGGAACTGATGAGGTATGTGCGGGCGGCGCTCGACTTCAAAAGCGATGAAAGGCTTATGACAA < 2:143949/113‑1 CCCT‑TCGCTCC‑AGGGCCACTCACCAGGCTTCGGAACTGATGAGGTATGTGCGGGCGGCGCTCGACTTCAAAAGCGATGAAAGGCTTATGACAAGCACCTCCGGCCGAGATGTCTTATCAGAATGGACAAGAAGCCCCTCGATGCGAGGGG < 1:563758/150‑1 CCT‑TCGCTCC‑AGGGCCACTCACCAGGCTTCGGAACTGATGAGGTATGTGCGGGCGGCGCTCGACTTCAAAAGCGATGAAAGGCTTATGACAAGCACCTCCGGCCGAGATGTCTTATCAGAATGGACAAAAAGCCCCTCGATGCGAGGGGC > 2:381139/1‑150 T‑TCGCTCC‑AGGGCCACTCACCAGGCTTCGGAACTGATGAGGTATGTGCGGGCGGCGCTCGACTTCAAAAGCGATGAAAGGCTTATGACAAGCACCTCCGGCCGAGATGTCTTATCAGAATGGACAAAAAGCCCCTCGATGCGAGGGGCTC > 1:360440/1‑150 AGCGTCGAGTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/395824‑395980 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtggccct‑TCGCTCC‑AGGGCCACTCACCAGGCTTCGGAACTGATGAGGTATGTGCGGGCGGCGCTCGACTTCAAAAGCGATGAAAGGCTTATGACAAGCACCTCCGGCCGAGATGTCTTATCAGAATGGACAAAAAGCCCCTCGATGCGAGGGGCTC < NC_002947/395987‑395839 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |