New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 395980	32 (0.740)	8 (0.200)	8/236	NT	19.8%	intergenic (+159/+45)	fdhA/PP_0329	formaldehyde dehydrogenase/hypothetical protein
	?	NC_002947	= 395987	35 (0.870)					intergenic (+166/+38)	fdhA/PP_0329	formaldehyde dehydrogenase/hypothetical protein

GAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATCGTCACGTTTTTTGGGAGCGTAGAACATGTTTTCA  >  NC_002947/395839‑396136                                                                                                                                                      |                                                                                                                                                      gagCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAa                                                                                                                                                      >  1:360440‑M2/1‑149 (MQ=255)   gCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAagg                                                                                                                                                    >  2:381139‑M2/1‑147 (MQ=255)    ccccTCGCATCGAGGGGCTTCTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAaggg                                                                                                                                                   <  1:563758‑M2/150‑5 (MQ=255)                 ggggCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTc                                                                                                                                      <  2:990676/150‑1 (MQ=255)                 ggggCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTc                                                                                                                                      >  1:1002222/1‑150 (MQ=255)                                  cTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGt                                                                                                                     <  1:420185/150‑1 (MQ=255)                                     aTAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTaa                                                                                                                  >  1:1100398/1‑150 (MQ=255)                                                   ccGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATtgtg                                                                                                    <  2:903459/150‑1 (MQ=255)                                                             ttGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCTTCGCTCCAgggccacccaccaggcttcggaa                                                                                                                                <  2:143949‑M2/113‑24 (MQ=255)                                                             ttGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑TC‑GCTCcagggccacccaccaggcttcggaa                                                                                                                              >  1:143949‑M2/1‑88 (MQ=255)                                                             ttGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAagggccactcaccaggcttcggaactgatga                                                                                                                        >  1:350892‑M2/1‑89 (MQ=255)                                                             ttGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAagggccactcaccaggcttcggaactgatga                                                                                                                        <  2:350892‑M2/120‑32 (MQ=255)                                                                  aTAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCAt                                                                                     >  2:683445/1‑150 (MQ=255)                                                                    aaGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTg                                                                                   >  1:389473/1‑150 (MQ=255)                                                                       ccTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGttt                                                                                <  2:389473/150‑1 (MQ=255)                                                                       ccTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGttt                                                                                >  2:254545/1‑150 (MQ=255)                                                                                        aGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATGGTGGCCGGCGCGTCTCATTGTTTGCGTAGGTTGCCCCgca                                                               >  2:974512/1‑148 (MQ=255)                                                                                           cGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTg                                                            <  1:229980/150‑1 (MQ=255)                                                                                            gAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTgg                                                           >  2:727611/1‑150 (MQ=255)                                                                                              gcgcCGCCCGCACATCCCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTTCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTa                                                         <  1:19859/150‑1 (MQ=255)                                                                                              gcgcCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTa                                                         <  1:683445/150‑1 (MQ=255)                                                                                                  cgcccgcACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGTCCCGAATTGGTAGTTc                                                     <  2:1100398/150‑1 (MQ=255)                                                                                                  cgcccgcACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTc                                                     <  1:1059918/150‑1 (MQ=255)                                                                                                  cgcacgcaCATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGAGGGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTc                                                     <  1:1060513/150‑1 (MQ=255)                                                                                                   gcccgcACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTcc                                                    <  2:563758/150‑1 (MQ=255)                                                                                                       gcACGTGCCTCATCGGTTCCGAGGCCTGGCGGGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGGCATTTTCATGCAGGCAGTTAATTACTCCGATTGTGGCCGGCGCGTGTCCTTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTgtc                                                <  1:455819/150‑1 (MQ=255)                                                                                                                  atcaGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAgggt                                     >  1:431745/1‑148 (MQ=255)                                                                                                                  atcaGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGAt                                     <  1:1052417/150‑1 (MQ=255)                                                                                                                   tcaGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATc                                    >  2:557304/1‑150 (MQ=255)                                                                                                                      gTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATCGTc                                 >  1:526301/1‑150 (MQ=255)                                                                                                                          cGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAg                                                        >  2:279424/1‑123 (MQ=255)                                                                                                                          cGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAg                                                        <  1:279424/123‑1 (MQ=255)                                                                                                                          cGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATCGTCACGt                             >  2:411327/1‑150 (MQ=255)                                                                                                                           gAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGAt                                     >  2:19083/1‑141 (MQ=255)                                                                                                                           gAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGAt                                     <  1:19083/141‑1 (MQ=255)                                                                                                                           gAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTACCAGGGTGTGCGTCGGTTGCCCCGAAGTGGTAGTTCCTGTCGTCATGAGGATCGTCACGtt                            >  1:11639/1‑150 (MQ=255)                                                                                                                               ccTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATCGTCACGtttttt                        <  1:973314/150‑1 (MQ=255)                                                                                                                                cTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATCGTCACGTTTTTTg                       <  1:908847/150‑1 (MQ=255)                                                                                                                                 tGGTGAGTGGCCCT‑GGAGCGAagggccactcaccaggcttcggaactgatgaggtatgtgcgggcggcgctcgacttcaaaa                                                                                          >  1:560064‑M2/1‑21 (MQ=255)                                                                                                                                 tGGTGAGTGGCCCT‑GGAGCGAagggccactcaccaggcttcggaactgatgaggtatgtgcgggcggcgctcgacttcaaaa                                                                                          <  2:560064‑M2/82‑62 (MQ=255)                                                                                                                                 tGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATCGTCACGTTTTTTgg                      <  2:1019977/150‑1 (MQ=255)                                                                                                                                        tGGCCCT‑GGAGCGAagggccactcaccaggcttcggaactgatgaggtatgtgcgggcggcgctcgacttcaaaagcgatga                                                                                   <  2:35064‑M2/82‑69 (MQ=255)                                                                                                                                        tGGCCCT‑GGAGCGAagggccactcaccaggcttcggaactgatgaggtatgtgcgggcggcgctcgacttcaaaagcgatga                                                                                   >  1:35064‑M2/1‑14 (MQ=255)                                                                                                                                           cccT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATCGTCACGTTTTTTGGGAGCGTAGaa            <  1:557304/150‑1 (MQ=255)                                                                                                                                            ccT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATCGTCACGTTTTTTGGGAGCGTAGAAc           >  2:345727/1‑150 (MQ=255)                                                                                                                                            ccT‑GGAGCGAAGGGCCACTGCGCAGTCATTTCCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATCGTCACGTTTTTTGGGAGCGTAGAAc           >  1:711413/1‑150 (MQ=255)                                                                                                                                                      aaGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTCTGCGGAGGTTGCCCCGAATTCGTAGTTCCTGTCGTCATGAGGATCGTCACGTTTTTTGGGAGCGTAGAACATGTTTTCa  <  1:411327/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      GAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATCGTCACGTTTTTTGGGAGCGTAGAACATGTTTTCA  >  NC_002947/395839‑396136

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.