New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1731232	16 (0.370)	5 (0.150)	5/198	NT	26.0%	intergenic (‑103/+88)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	= 1731268	16 (0.470)					intergenic (‑139/+52)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase

TGACCGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1731060‑1731232 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccattcgcgggcacgcccgctcccacCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCGTGCTGCCCGAAACCATTTGATATAAGATAACGCCCCTCAGATTTCCCCGCCTTGCCTTGCCCCGGAGTCCCCCATGACGGCC  <  NC_002947/1731268‑1731121                                                                                                                                                                                                                                                                                                                                   TGACCGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCA                                                                                                                                                                             >  2:241108/1‑150    CCGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTC                                                                                                                                                                          <  1:858112/150‑1     CGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTC                                                                                                                                                                          <  1:529626/149‑1     CGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTC                                                                                                                                                                          >  2:529626/1‑149                       GTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCA                                                                                                                                                       <  1:883735/150‑1                            AGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCG                                                                                                                                                                       >  1:1037197/1‑129                            AGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCG                                                                                                                                                                       <  2:1037197/129‑1                                               CGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCA                                                                                                                                                                   <  1:818437/114‑1                                               CGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCA                                                                                                                                                                   >  2:818437/1‑114                                                      TCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCAC                                                                                                                                                                  <  1:209647/108‑1                                                      TCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCAC                                                                                                                                                                  >  2:209647/1‑108                                                                 CGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGG                                                                                                             <  2:107205/150‑1                                                                          GGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGT                                                                                                                <  2:299127/138‑1                                                                          GGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACAGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGT                                                                                                                >  1:299127/1‑138                                                                                                                           ATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGC                                                                                                  <  2:393308/103‑1                                                                                                                           ATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGC                                                                                                  >  1:393308/1‑103                                                                                                                                                               CACGCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCGTGCTGCCCGAAACCATTTGATATAAGATAACGCCCCTCAGATTTCCCCGCCTTGCCTTGCCCCGGAGTC               >  1:206222/1‑150                                                                                                                                                                  GCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCGTGCTGCCCGAAACCATTT                                                                  >  1:436163/1‑96                                                                                                                                                                  GCCCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCGTGCTGCCCGAAACCATTT                                                                  <  2:436163/96‑1                                                                                                                                                                    CCGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGATGCATGTCCCGAAACCATTTGATATAAGATAACGCCGCTCAGATTTCCCCGCCTTGCCTTGCCCCGGGGTCCCCCA          >  1:351105/1‑150                                                                                                                                                                     CGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTAC                                                                                                                    <  2:884311/43‑1                                                                                                                                                                     CGCTCCCACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTAC                                                                                                                    >  1:884311/1‑43                                                                                                                                                                           CACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCGTGCTGCCCGAAACCATTTGATATAAGATAACGCCCCTCAGATTTCCCCGCCTTGCCTTGCCCCGGAGTCCCCCGTGACGGg   >  1:884316/1‑149                                                                                                                                                                           CACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCGTGCTGCCCGAAACCATTTGATATAAGATAACGCCCCTCAGATTTCCCCGCCTTGCCTTGCCCCGGAGTCCCCCATGACGGC   >  1:516363/1‑150                                                                                                                                                                            ACCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACAAGTACGAGCGGGCATGCCCGGGAAGGGGCCGTGCCGCCCGAACCCATTTGATATAAGATAACGCCCCTCAGATTTCCCCGCCTTGCCTTCCCCCGCAGTCCCCCACGACGGCC  >  2:39069/1‑150                                                                                                                                                                                                                                                                                                                                   TGACCGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1731060‑1731232 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccattcgcgggcacgcccgctcccacCGGCTTGGCACAGGCGTTCAGAGCTGTGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCGTGCTGCCCGAAACCATTTGATATAAGATAACGCCCCTCAGATTTCCCCGCCTTGCCTTGCCCCGGAGTCCCCCATGACGGCC  <  NC_002947/1731268‑1731121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.