New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1731232	16 (0.370)	5 (0.150)	5/198	NT	26.0%	intergenic (‑103/+88)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase
	?	NC_002947	= 1731268	16 (0.470)					intergenic (‑139/+52)	dapE/PP_1526	succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase

GGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAA  >  NC_002947/1731121‑1731406                                                                                                                                                    |                                                                                                                                           ggCCGTCGTGGGGGACTGCGGGGGAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGGTTCGGGCGGCACGGCCCCTTCCCGGGCATGCCCGCTCGTACTTGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgt                                                                                                                                          >  2:39069‑M2/1‑148 (MQ=255)  gCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtg                                                                                                                                         >  1:516363‑M2/1‑147 (MQ=255)  cccgTCACGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtg                                                                                                                                         >  1:884316‑M2/2‑147 (MQ=255)         tGGGGGACCCCGGGGCAAGGCAAGGCGGGGAAATCTGAGCGGCGTTATCTTATATCAAATGGTTTCGGGACATGCATCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtgggagcgg                                                                                                                                  >  1:351105‑M2/1‑140 (MQ=255)              gACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtgggagcgggcgtg                                                                                                                             >  1:206222‑M2/1‑135 (MQ=255)                                                   cGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACtt                                                                                        >  2:758534/1‑150 (MQ=255)                                                                 aaaTGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtgggagcgggc                                                                                                                                <  2:436163‑M2/96‑13 (MQ=255)                                                                 aaaTGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtgggagcgggc                                                                                                                                >  1:436163‑M2/1‑84 (MQ=255)                                                                     ggTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTgg                                                                      <  2:817740/150‑1 (MQ=255)                                                                       tttCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTgg                                                                      >  1:654656/1‑148 (MQ=255)                                                                       tttCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTgg                                                                      <  2:654656/148‑1 (MQ=255)                                                                                     gCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAg                                                                                               >  2:408160/1‑109 (MQ=255)                                                                                     gCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAg                                                                                               <  1:408160/109‑1 (MQ=255)                                                                                         aTTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGACTGACACAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCtt                                                  >  1:631115/1‑150 (MQ=255)                                                                                                 gCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtgggagcgggcgtgcccgcgaatgggccgtgctgcccgaaaccatttgat                                                                                         <  2:393308‑M2/103‑52 (MQ=255)                                                                                                 gCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtgggagcgggcgtgcccgcgaatgggccgtgctgcccgaaaccatttgat                                                                                         >  1:393308‑M2/1‑52 (MQ=255)                                                                                                     gCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGcgacga                                      >  2:1019684/1‑150 (MQ=255)                                                                                                     gCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGcgacga                                      <  1:1019684/150‑1 (MQ=255)                                                                                                        cGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCTTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAg                                   <  1:758534/150‑1 (MQ=255)                                                                                                            cccACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtgggagcgggcgtgcccgcgaatgggccgtgctgcccgaaaccatttgatataagataacgcccctcagatttccccgccttgccttgccccggagtcccccatgacg                               <  2:107205‑M2/150‑110 (MQ=255)                                                                                                               acaGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtgggagcgggcgtgcccgcgaatgggctgtgctgcccgaaaccatttgatataagataacgcccctcagatttccccgccttgccttgccccggagtcc                                        >  1:299127‑M2/1‑38 (MQ=255)                                                                                                               acaGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtgggagcgggcgtgcccgcgaatgggctgtgctgcccgaaaccatttgatataagataacgcccctcagatttccccgccttgccttgccccggagtcc                                        <  2:299127‑M2/138‑101 (MQ=255)                                                                                                                   gTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtgggagcg                                                                                                                                   <  2:884311‑M2/43‑10 (MQ=255)                                                                                                                   gTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGgtgggagcg                                                                                                                                   >  1:884311‑M2/1‑34 (MQ=255)                                                                                                                       tGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAg                    >  1:488809/1‑150 (MQ=255)                                                                                                                         cacaGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAg                    <  2:1056815/148‑1 (MQ=255)                                                                                                                         cacaGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAg                    >  1:1056815/1‑148 (MQ=255)                                                                                                                              ctctGAGCGTCTGTGCCGAGCCGGTGGAAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGcc             >  2:42892/1‑150 (MQ=255)                                                                                                                                ctGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCcac           >  2:1091508/1‑150 (MQ=255)                                                                                                                                         tgtgCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCaa  >  2:1032451/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                           GGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAA  >  NC_002947/1731121‑1731406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.