New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1885721 | 56 (1.290) | 3 (0.070) | 3/240 | NT | 5.5% | coding (346/1488 nt) | rmuC | DNA recombination limiting inversions protein |
? | NC_002947 | = 1885747 | 51 (1.250) | coding (372/1488 nt) | rmuC | DNA recombination limiting inversions protein |
CAGTTGGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTGCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1885607‑1885721 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcgtcCAGGCGCGCGGTTTGCGCCTCCAGGCGACGCAGTTCGGCTTCGCGATTGGCGCGCTCAAGGCTCCAGGCGTGGGCGGCATCACGGGCGTTGTCGCGATCGATCTGCAGCAGCTCCAGCTCACGGCTTTGGGCGGCCAACTGGGCCTGC < NC_002947/1885747‑1885600 CAGTTGGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTGCGTCCAGGCGCGCGGTTTGCGCCTCCAGGCGACGCAGTT < 1:857368/150‑1 CCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTGCGTCCAGGCGCGCGGTTTGCGCCTCCAGGCGACGCAGTTC > 1:173318/1‑144 CCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTGCGTCCAGGCGCGCGGTTTGCGCCTCCAGGCGACGCAGTTC < 2:173318/144‑1 GCGTCCAGGCGCGCGGTTTGCGCCTCCAGGCGACGCAGTTCGGCTTCGCGATTGGCGCGCTCAAGGCTCCAGGCGTGGGCGGCATCACGGGCGTTGTCGCGATCGATCTGCAGCAGCTCCAGCTCACGGCTTTGGGCGGCCAACTGGGCC < 2:979286/150‑1 GTCCAGGCGCGCGGTTTGCGCCTCCAGGCGACGCAGTTCGGCTTCGCGATTGGCGCGCTCAAGGCTCCAGGCGTGGGCGGCATCACGGGCGTTGTCGCGATCGATCTGCAGCAGCTCCAGCTCACGGCTTTGGGCGGCCAACTGGGCCTG > 2:1101976/1‑150 TCCAGGCGCGCGGTTTGCGCCTCCAGGCGACGCAGTTCGACTTCGCGATTGGCGCGCTCAAGGCTCCAGGCGTGGGCGGCATCACGGGCGTTGTCGCGATCGATCTGCAGCAGCTCCAGCTCACGGCTTTGGGCGGCCAACTGGGCCTGC > 2:357261/1‑150 CAGTTGGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTGCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1885607‑1885721 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcgtcCAGGCGCGCGGTTTGCGCCTCCAGGCGACGCAGTTCGGCTTCGCGATTGGCGCGCTCAAGGCTCCAGGCGTGGGCGGCATCACGGGCGTTGTCGCGATCGATCTGCAGCAGCTCCAGCTCACGGCTTTGGGCGGCCAACTGGGCCTGC < NC_002947/1885747‑1885600 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |