New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2273408	43 (0.990)	3 (0.070)	3/246	NT	6.5%	coding (1002/1041 nt)	PP_2004	AraC family transcriptional regulator
	?	NC_002947	= 2273450	45 (1.070)					coding (960/1041 nt)	PP_2004	AraC family transcriptional regulator

AGGAAGAACTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2273299‑2273408 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcCGAGGCCTTCCAGCGCGCATTCAAGCGCTGGACGGGCCTCACGCCGGGGGA  <  NC_002947/2273450‑2273400                                                                                                                                                                   AGGAAGAACTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCCGAGGCCTTCCAGCGCGCATTCAAGCGCTGGACGGGC                >  1:1123866/1‑147 AGGAAGAACTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCCGAGGCCTTCCAGCGCGCATTCAAGCGCTGGACGGGC                <  2:1123866/147‑1            CTCGAAACCCAGGCTTACGAGCGGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCCGAGGCCTTCCAGCGCGCATTCAAGCGCTGGACGGGCCTCACGCCGGGGGA  <  2:339605/150‑1                                 CTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCG                                                       >  1:1064706/1‑76                                 CTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCG                                                       <  2:1064706/76‑1                                                                                                                                                                   AGGAAGAACTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2273299‑2273408 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcCGAGGCCTTCCAGCGCGCATTCAAGCGCTGGACGGGCCTCACGCCGGGGGA  <  NC_002947/2273450‑2273400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.