| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2273408 | 43 (0.990) | 3 (0.070) | 3/246 | NT | 6.5% | coding (1002/1041 nt) | PP_2004 | AraC family transcriptional regulator |
| ? | NC_002947 | = 2273450 | 45 (1.070) | coding (960/1041 nt) | PP_2004 | AraC family transcriptional regulator | |||||
AGAGGACGCAGGGCAATGGATGAATACCAGGAAGAACTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCACGGATGTAGGTCTCGGCCAGGTCGCGCCGGGTTTCGTTGAGCAGGTCGCGAAA > NC_002947/2273271‑2273557 | agagGACGCAGGGCAATGGATGAATACCAGGAAGAACTACTCGAAACCCAGGCTTACGAACTGGACACCCGGTAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTc > 1:356348/1‑150 (MQ=255)agagGACGCAGGGCAATGGATGAATACCAGGAAGAACTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAAGCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCAGAACTCCCCCGGCGTGAGGCCCGTc < 2:1065291/150‑1 (MQ=255) gACGCAGGGCAATGGATGAATACCAGGAAGAACTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAgc > 1:37513/1‑150 (MQ=255) gCAATGGATGAATACCAGGAAGAACTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAAt < 2:37513/150‑1 (MQ=255) gATGAATACCAGGAAGAACTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATgcgcgc > 1:847028/1‑150 (MQ=255) aTGAATACCAGGAAGAACTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCt < 2:255339/150‑1 (MQ=255) ccAGGAAGAACTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGc > 2:759700/1‑150 (MQ=255) cAGGAAGAACTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGcc > 1:707326/1‑150 (MQ=255) aGGAAGAACTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCcgaggccttccagcgcgcattcaagcgctggacgggc < 2:1123866‑M1/147‑38 (MQ=255) aGGAAGAACTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCcgaggccttccagcgcgcattcaagcgctggacgggc > 1:1123866‑M1/1‑110 (MQ=255) ggAAGAACTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTc < 1:601295/150‑1 (MQ=255) agaaCTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGc < 1:731353/113‑1 (MQ=255) agaaCTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGc > 2:731353/1‑113 (MQ=255) ctCGAAACCCAGGCTTACGAGCGGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCcgaggccttccagcgcgcattcaagcgctggacgggcctcacgccggggga < 2:339605‑M1/150‑52 (MQ=255) ccGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGCCGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCaa > 2:1036090/2‑150 (MQ=255) gAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAAc > 2:106113/1‑150 (MQ=255) ccAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCaa < 1:428421/150‑1 (MQ=255) cAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGc < 1:645668/97‑1 (MQ=255) cAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGc > 2:645668/1‑97 (MQ=255) ttACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAGGCAAACCCCAACAGATa > 2:763259/1‑150 (MQ=255) acacCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGc < 2:707326/150‑1 (MQ=255) ggCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCCGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAgcgc > 1:1093983/1‑150 (MQ=255) gacgacGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCgtg > 1:1100092/1‑150 (MQ=255) acgCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCAc < 1:178662/150‑1 (MQ=255) cgCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGGATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACGGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCACg < 1:250336/150‑1 (MQ=255) cgCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCACg > 2:175681/1‑150 (MQ=255) ccACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCACGGa < 2:45622/150‑1 (MQ=255) cACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCTCTCTGGAAGGCCTCGGCCGAAGCAACCCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCACGGAt > 1:352421/1‑150 (MQ=255) ccGAACCCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCANCAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCACGGATGt < 1:106113/150‑1 (MQ=255) cGACCTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCACGGATGTa < 1:1036090/150‑1 (MQ=255) tctAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCACGGATGTAGGtct > 2:7526/1‑150 (MQ=255) tAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCAc > 1:1058153/1‑136 (MQ=255) tAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCAc < 2:1058153/136‑1 (MQ=255) gCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCACGGATGTAg > 1:557727/1‑137 (MQ=255) gCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCACGGATGTAg < 2:557727/137‑1 (MQ=255) tGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGc < 2:123408/80‑1 (MQ=255) tGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGc > 1:123408/1‑80 (MQ=255) cGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCACGGATGTAGGTCTCGGCCAGGTCgcgc > 1:84204/1‑150 (MQ=255) tggctgCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCACGGATGTAGGTCTCGGCCAGGTCGCGCCgg < 1:493004/150‑1 (MQ=255) tgCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCACGGATGTAg < 2:959938/125‑1 (MQ=255) tgCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCACGGATGTAg > 1:959938/1‑125 (MQ=255) gcggAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCACGGATGTAGGTCTCGGCCAGGTCGCGCCGGGTTTCGtt < 2:1075612/150‑1 (MQ=255) ggAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAgg < 2:719330/96‑1 (MQ=255) ggAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAgg > 1:719330/1‑96 (MQ=255) aaCTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAGGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCACGGATGTAGGTCTCGGCCAGGTCGCGCCGGGTTTCGTTGAGc < 1:763259/150‑1 (MQ=255) tCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGgccgggggagttccgccgcagccagcggcagccgagctagagttcggtggcgtcgtcggccggttccggggtgtcccgctcgtaagcctgggtttcgag < 2:339605‑M2/150‑100 (MQ=255) tCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCACGGATGTAGGTCTCGGCCAGGTCGCGCCGGGTTTCGTTGAGCAgg > 2:353514/1‑150 (MQ=255) ccGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCACGGATGTAGGTCTCGGCCAGGTCGCGCCGGGTTTCGTTGAGCAGGTcgc > 2:920585/1‑150 (MQ=255) cGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCACGGATGTAGGTCTCGGCCAGGTCGCGCCGGGTTTCGTTGAGCAGGTCGCGaaa < 2:1100092/150‑1 (MQ=255) | AGAGGACGCAGGGCAATGGATGAATACCAGGAAGAACTACTCGAAACCCAGGCTTACGAACTGGACACCCCGGAACCGGCCGACGACGCCACCGAACTCTAGCTCGGCTGCCGCTGGCTGCGGCGGAACTCCCCCGGCGTGAGGCCCGTCCAGCGCTTGAATGCGCGCTGGAAGGCCTCGGCCGAAGCAAACCCCAACAGATAGGCTATCTCGCCAAAGGCCAGCGCCGTGTCACGGATGTAGGTCTCGGCCAGGTCGCGCCGGGTTTCGTTGAGCAGGTCGCGAAA > NC_002947/2273271‑2273557 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |