New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2443134	36 (0.830)	4 (0.100)	4/246	NT	10.3%	coding (2229/2610 nt)	topA	DNA topoisomerase I
	?	NC_002947	= 2443155	35 (0.830)					coding (2250/2610 nt)	topA	DNA topoisomerase I

AAGGCAACTACCGCATCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2443001‑2443134 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcCTCGCCGCTCTTGAGCAGCTTGCGGGTGTTCTTGCA  <  NC_002947/2443155‑2443120                                                                                                                                                                            AAGGCAACTACCGCATCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCCTCGCCGCTCTTGAGC                      >  1:667586/1‑150                     GGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCCTCGCCGCTCTTGAGCAGCTTGCGGGTGTTCTTGCA  <  2:667586/150‑1                                 CCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCCTCGCCGCTCTTGAGCAGCTTGCGGGT           >  1:946544/1‑129                                 CCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCCTCGCCGCTCTTGAGCAGCTTGCGGGT           <  2:946544/129‑1                                                                                                                                                                            AAGGCAACTACCGCATCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2443001‑2443134 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcCTCGCCGCTCTTGAGCAGCTTGCGGGTGTTCTTGCA  <  NC_002947/2443155‑2443120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.