New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2443134	36 (0.830)	4 (0.100)	4/246	NT	10.3%	coding (2229/2610 nt)	topA	DNA topoisomerase I
	?	NC_002947	= 2443155	35 (0.830)					coding (2250/2610 nt)	topA	DNA topoisomerase I

CGCATCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGGTTGTTCCTGGCTGCCAGCCAGTTCCCCAAGAACCGCGAAACCCGTGCGCCGCTG  >  NC_002947/2443012‑2443302                                                                                                                                                |                                                                                                                                                    cGCATCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGgcggcg                                                                                                                                               <  1:458879/150‑1 (MQ=255)     tCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCAc                                                                                                                                           >  2:441364/1‑150 (MQ=255)                gAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGAGCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGGGTCCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGAc                                                                                                                                >  1:182721/1‑150 (MQ=255)                    ggCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAgg                                                                                                                            <  1:677405/150‑1 (MQ=255)                                          gTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTg                                                                                                      <  1:441364/150‑1 (MQ=255)                                             cGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAg                                                                                                                             <  2:1016538/124‑1 (MQ=255)                                             cGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAg                                                                                                                             >  1:1016538/1‑124 (MQ=255)                                                 aGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAg                                                                                               <  2:601773/150‑1 (MQ=255)                                                      gaTGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTcga                                                                                          <  2:85072/150‑1 (MQ=255)                                                          cAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAgg                                                                                              <  1:171177/142‑1 (MQ=255)                                                          cAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAgg                                                                                              >  2:171177/1‑142 (MQ=255)                                                           aaTTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATa                                                                                     >  1:391889/1‑150 (MQ=255)                                                                       gCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCga                                                                                                   >  1:528876/1‑124 (MQ=255)                                                                       gCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCga                                                                                                   <  2:528876/124‑1 (MQ=255)                                                                          gTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCa                                                                                                                                            <  1:260213/80‑1 (MQ=255)                                                                          gTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCa                                                                                                                                            >  2:260213/1‑80 (MQ=255)                                                                          gTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGACGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCGCAAGTGCGAGAAGGTAGACGATACCTACGAGCTGcgcg                                                                      >  2:486628/1‑150 (MQ=255)                                                                                   aGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGAGGCCATGCCGGAGCTCAAGAGCTAGAAGCACGACGATACCTACTTGCTGCGCCACGGTGCtt                                                             >  2:242053/1‑150 (MQ=255)                                                                                       cttcGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCgg                                                         <  1:1043598/150‑1 (MQ=255)                                                                                            gCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTcgacga                                                                                       >  1:8566/1‑115 (MQ=255)                                                                                            gCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTcgacga                                                                                       <  2:8566/115‑1 (MQ=255)                                                                                                 aCCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGa                                                                                                               <  1:968094/86‑1 (MQ=255)                                                                                                 aCCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGa                                                                                                               >  2:968094/1‑86 (MQ=255)                                                                                                            gTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGtgctgc                                                                         >  2:582000/1‑113 (MQ=255)                                                                                                            gTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGtgctgc                                                                         <  1:582000/113‑1 (MQ=255)                                                                                                             tGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGgcgggtgttcttgcacgccgggttggtgcagccgaagaacttgccgaaacggccggtcttcaattgcatctcgctaccgcacttgtcgcactccaggctcggcccttcgtaacc                                   <  2:667586‑M2/150‑115 (MQ=255)                                                                                                               aaaGAACACCCGCAAGCTGCTCAAGGGCGGCGAGGCGGCGCCACCGAAGACGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGGTTGTTCCTGGCTGgcagccagga                                 <  1:843209/149‑3 (MQ=255)                                                                                                                aaGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGGTTGTTCCTGGCTGCCAGCCAGTTc                                >  1:695907/1‑150 (MQ=255)                                                                                                                      acCCGCAAGCTGCTCAAGAGCGGCGAGgcgggtgttcttgcacgccgggttggtgcagccgaagaacttgccgaaacggccggtcttcaattgcatctcgctaccgcacttgtcgcactccaggctcgg                                               >  1:946544‑M2/1‑27 (MQ=255)                                                                                                                      acCCGCAAGCTGCTCAAGAGCGGCGAGgcgggtgttcttgcacgccgggttggtgcagccgaagaacttgccgaaacggccggtcttcaattgcatctcgctaccgcacttgtcgcactccaggctcgg                                               <  2:946544‑M2/129‑103 (MQ=255)                                                                                                                        ccGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACACGGCGGACATGCCGGTGCTCAAGTGCGCGAAGGTCGACGATACCTACGTAGTACGCCACGGTGCTTCCGCGTTCTTCCTGGCAGCCAGCCAGGCCCCCACGaa                        >  2:90404/1‑150 (MQ=255)                                                                                                                         cGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGgtt                                                      >  1:1070370/1‑119 (MQ=255)                                                                                                                         cGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGgtt                                                      >  1:1069640/1‑119 (MQ=255)                                                                                                                         cGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGgtt                                                      <  2:1070370/119‑1 (MQ=255)                                                                                                                         cGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGgtt                                                      <  2:1069640/119‑1 (MQ=255)                                                                                                                          gCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGGTTGTTCCTGGCTGCCAGCCAGTTCCCCAAGAAcc                      <  2:162352/150‑1 (MQ=255)                                                                                                                              gctgctCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGGTTGTTCCTGGCTGCCAGCCAGTTCCCCAAGAACCGCGa                  >  2:390106/1‑150 (MQ=255)                                                                                                                                tgctCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGGTTGTTCCTGGCTgcca                                        <  1:645689/126‑1 (MQ=255)                                                                                                                                tgctCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGGTTGTTCCTGGCTgcca                                        >  2:645689/1‑126 (MQ=255)                                                                                                                                 gctCAAGAGCGGCGAGgcgggtgttcttgcacgccgggttggtgcagccgaagaacttgccgaaacggccggtcttcaattgcatctcgctaccgcacttgtcgcactccaggctcggcccttcgtaacccttgatgcggtagttgcctt               >  1:667586‑M2/1‑16 (MQ=255)                                                                                                                                     aaGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGGTTGTTCCTGGCTGCCAGCCAGTTCCCCAAGAACCGCGAAACCCGt           <  1:746477/150‑1 (MQ=255)                                                                                                                                       gagCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACCTGCCGGAGCTCAAGGGGGAGATGGTCGACGATACCTGCGTGCTGCGCGCCGGTGCTTCCGGGCTGTGCCTGGCTGCCAGCCGGTTTGGCGAGAACCGCGCAACCGGTgc         >  2:356191/1‑150 (MQ=255)                                                                                                                                              gAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTcgac                                                                                         >  1:684349/1‑63 (MQ=255)                                                                                                                                              gAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTcgac                                                                                         <  2:684349/63‑1 (MQ=255)                                                                                                                                              gAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGGTTGTTCCTGGCTGCCAGCCAGTTCCCCAAGAACCGCGAAACCCGTGCGCCGCTg  >  2:727552/1‑150 (MQ=255)                                                                                                                                                |                                                                                                                                                    CGCATCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGGTTGTTCCTGGCTGCCAGCCAGTTCCCCAAGAACCGCGAAACCCGTGCGCCGCTG  >  NC_002947/2443012‑2443302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.