New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2691928	30 (0.690)	4 (0.100)	4/230	NT	12.1%	coding (46/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein
	?	NC_002947	= 2691938	31 (0.790)					coding (56/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein

ACCGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2691771‑2691928 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgggcctggGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGTGTCGCGGTAAAGCCCGGCCGGCAGCGCACGCGGTTGCGCCACTACCA  <  NC_002947/2691938‑2691791                                                                                                                                                                                                                                                                                                                    ACCGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAGCGAACCTTTCATATTGCGTCCTCGCAGGCCT                                                                                                                                                              >  2:75116/1‑150   CGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGG                                                                                                                                                            <  1:219833/150‑1   CGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGG                                                                                                                                                            >  1:360860/1‑150         CCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGG                                                                                                                                                      >  2:874582/1‑150         CCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCCGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGG                                                                                                                                                      <  2:689077/150‑1                                                       GCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGA                                                                                                                          >  1:315574/1‑132                                                       GCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGA                                                                                                                          <  2:315574/132‑1                                                                                                 ACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGGAAGCCAACGCCAGGCCCAGG                                                                                                                                 <  1:284579/83‑1                                                                                                 ACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGGAAGCCAACGCCAGGCCCAGG                                                                                                                                 >  2:284579/1‑83                                                                                                                                                   GCCTGGGCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAGGAC                                                                                                                      >  1:237064/1‑44                                                                                                                                                   GCCTGGGCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAGGAC                                                                                                                      <  2:237064/44‑1                                                                                                                                                        GGCCTGGGAAGCCAACGCCAGGCCCAGGCCTGCGATGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGTGTCGCGGTAAAGCCCGGCCGGCAGCGCACGCGGTTGCGCCAC       <  2:781852/150‑1                                                                                                                                                           CTGGGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGTGTCGCGGTAAAGCCCGGCCGGCAGCGCACGCGGTTGCGCCACTAC    <  1:266761/150‑1                                                                                                                                                             GGGAAGCCAACGCCAGGCCCAGGCCTGAGAGGAAGCAATGTGAAAGGTTCGTTCGCATCGGAGTCTCCTTTCGTGGTTACCAGTCCAGGGTCACTCTGAGGGTGTCGCGGTAAAGCCCGGCCGGCAGCGCACGCGGTTGCGCCACTACCA  >  2:680425/1‑150                                                                                                                                                                                                                                                                                                                    ACCGATTCCCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2691771‑2691928 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgggcctggGAAGCCAACGCCAGGCCCAGGCCTGCGAGGACGCAATATGAAAGGTTCGTTCGCATCGGAGTCTCCTTGCGTGGTTACCAGTCCAGGGTCACTCTGAGGGTGTCGCGGTAAAGCCCGGCCGGCAGCGCACGCGGTTGCGCCACTACCA  <  NC_002947/2691938‑2691791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.