| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2691928 | 30 (0.690) | 4 (0.100) | 4/230 | NT | 12.1% | coding (46/534 nt) | PP_2359 | putative Type 1 pili subunit CsuA/B protein |
| ? | NC_002947 | = 2691938 | 31 (0.790) | coding (56/534 nt) | PP_2359 | putative Type 1 pili subunit CsuA/B protein | |||||
CCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTC > NC_002947/2691779‑2692077 | ccATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGG > 2:874582‑M1/1‑150 (MQ=255)ccATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCCGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGG < 2:689077‑M1/150‑1 (MQ=255) tACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAATGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTAGGCCTGGCGTTg > 2:616821/1‑150 (MQ=255) tgGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGAAAGGAGACTCCGATGCGAACGAACCTTTCACATTGCTTCCTCTCAGGCCTGGGCCTGGCGTTGGCTTCcc > 2:680425‑M2/1‑148 (MQ=255) gTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCccag < 1:266761‑M2/150‑5 (MQ=255) gTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCATCGCAGGCCTGGGCCTGGCGTTGGCTTCccaggcc < 2:781852‑M2/150‑8 (MQ=255) cgTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACg < 1:345118/150‑1 (MQ=255) cgcTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGa < 1:971245/150‑1 (MQ=255) gccggccgGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAgg < 1:963993/150‑1 (MQ=255) cggccggGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGa < 1:874582/150‑1 (MQ=255) cggGCTTTACCGCGACACCCTCAGAGTGACCCTATGCAGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTAt > 1:932701/1‑150 (MQ=255) gCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGgaagccaacgccaggcccaggcctgcga > 1:315574‑M1/1‑104 (MQ=255) gCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGgaagccaacgccaggcccaggcctgcga < 2:315574‑M1/132‑29 (MQ=255) ccGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACTGTGACAGGGAGTATCAGCACGAc < 2:322281/150‑1 (MQ=255) tCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGa > 1:275142/1‑150 (MQ=255) ttGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCg < 2:395368/149‑1 (MQ=255) ccTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGAc < 2:77022/135‑1 (MQ=255) ccTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGAc > 1:77022/1‑135 (MQ=255) ccTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTg > 1:467964/1‑150 (MQ=255) tGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGcc > 2:293638/1‑150 (MQ=255) gACTGGTAACCACGCAAGGAGACTCCTATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAg < 2:360860/150‑1 (MQ=255) tGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTc > 1:12843/1‑150 (MQ=255) tAACCACGAAAGGAAACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAAt < 2:361037/150‑1 (MQ=255) aCGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGgaagccaacgccaggcccagg < 1:284579‑M1/83‑22 (MQ=255) aCGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGgaagccaacgccaggcccagg > 2:284579‑M1/1‑62 (MQ=255) gagaCTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTc < 2:944040/65‑1 (MQ=255) gagaCTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTc > 1:944040/1‑65 (MQ=255) gATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGcacgtcgggcacgtcggg > 1:636588/1‑150 (MQ=255) tGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGc < 1:493730/150‑1 (MQ=255) cTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCGCCGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGGCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGt < 2:266761/150‑1 (MQ=255) tttCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTg > 1:153681/1‑150 (MQ=255) tcagactGCGTCTTCGCGGGCCTGGGCCTGGCGTTGGCGTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTAAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGcc < 2:252104/144‑1 (MQ=255) atTGCGTCCTAGCAGGCCTGGGCCTGGCGTTGGCTTCCAAGGCCCAGGCGGCCACGGTTACAGGGAGAATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTgg > 2:434465/1‑150 (MQ=255) gTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCccaggcccaggc < 2:237064‑M2/44‑13 (MQ=255) gTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCccaggcccaggc > 1:237064‑M2/1‑32 (MQ=255) gTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTg > 1:44509/1‑144 (MQ=255) gTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTg < 2:44509/144‑1 (MQ=255) tCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGa > 2:793484/1‑130 (MQ=255) tCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGa < 1:793484/130‑1 (MQ=255) tCGCAGGCCTGGGCCTGGCGTTGGCTTCccaggcccaggcctgcgaggacgcaatatgaaaggttcgttcgcatcggagtctccttgcgtggttaccagtccagggtcactctgagggtgtcgcggtaaagc > 1:315574‑M2/1‑28 (MQ=255) tCGCAGGCCTGGGCCTGGCGTTGGCTTCccaggcccaggcctgcgaggacgcaatatgaaaggttcgttcgcatcggagtctccttgcgtggttaccagtccagggtcactctgagggtgtcgcggtaaagc < 2:315574‑M2/132‑105 (MQ=255) cAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGTCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTc > 2:395789/1‑128 (MQ=255) cAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGTCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTc < 1:395789/128‑1 (MQ=255) gcctgggcctgggaagccaacgccaggcccaggcctgcgaggac > 1:237064‑M1/1‑12 (MQ=255) gcctgggcctgggaagccaacgccaggcccaggcctgcgaggac < 2:237064‑M1/44‑33 (MQ=255) cctgggcctggCGTTGGCTTCccaggcccaggcctgcgaggacgcaatatgaaaggttcgttcgcatcggagtctccttgcgt < 1:284579‑M2/83‑63 (MQ=255) cctgggcctggCGTTGGCTTCccaggcccaggcctgcgaggacgcaatatgaaaggttcgttcgcatcggagtctccttgcgt > 2:284579‑M2/1‑21 (MQ=255) ggcctgggaagccaacgccaggcccaggcctgcgatgacgcaatatgaaaggttcgttcgcatcggagtctccttgcgtggttaccagtccagggtcactctgagggtgtcgcggtaaagcccggccggcagcgcacgcggttgcgccac < 2:781852‑M1/150‑144 (MQ=255) gcctggCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCACATCGATCCGGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCt > 1:412667/1‑150 (MQ=255) ctgggaagccaacgccaggcccaggcctgcgaggacgcaatatgaaaggttcgttcgcatcggagtctccttgcgtggttaccagtccagggtcactctgagggtgtcgcggtaaagcccggccggcagcgcacgcggttgcgccactac < 1:266761‑M1/150‑147 (MQ=255) tggCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGt < 1:1033791/150‑1 (MQ=255) gggaagccaacgccaggcccaggcctgagaggaagcaatgtgaaaggttcgttcgcatcggagtctcctttcgtggttaccagtccagggtcactctgagggtgtcgcggtaaagcccggccggcagcgcacgcggttgcgccactacca > 2:680425‑M1/1‑2 (MQ=255) gCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTc < 1:777210/150‑1 (MQ=255) | CCATCTACGGTGTGGTAGTGGCGCAACCGCGTGCGCTGCCGGCCGGGCTTTACCGCGACACCCTCAGAGTGACCCTGGACTGGTAACCACGCAAGGAGACTCCGATGCGAACGAACCTTTCATATTGCGTCCTCGCAGGCCTGGGCCTGGCGTTGGCTTCCCAGGCCCAGGCGGCCACGGTGACAGGGAGTATCAGCTCGACCCTGACGCTGACTGCGGCCTGCCAGGTCAATGGCACGTCGGGCACGTCGGGGCTTGACTTCGGTGCCCTGGACTTCGGCACCGAGGATGCCTTGTTC > NC_002947/2691779‑2692077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |