| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2991583 | 40 (0.920) | 10 (0.240) | 9/240 | NT | 17.6% | intergenic (‑61/+14) | vgrG‑I/hcpC‑I | type VI secretion system protein/hemolysin‑coregulated protein |
| ? | NC_002947 | 4611123 = | 56 (1.370) | intergenic (+39/‑2068) | hcpC‑II/PP_4084 | hemolysin‑coregulated protein/hypothetical protein | |||||
CTGATGCCCTCGCGGAGTTCGAACGACACCACTTCGAATGCAGCTTTGCCAACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGC‑GGGCATGGCCTGCCC‑GGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2991428‑2991583‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccc‑gggC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTTGAATTGGA > NC_002947/4611123‑4611271 CTGATGCCCTCGCGGAGTTCGAACGACACCACTTCGAATGCAGCTTTGCCAACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACCCAAAGCCCGGGC‑GGGCATGGCCTG < 2:973523/150‑1 GCCCTCGCGGAGTTCGAACGACACCACTTCGAATGCAGCTTTGCCAACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGC‑GGGCATGGCCTGCCC‑GG < 2:1114954/150‑1 CCCTCGCGGAGTTCGAACGACACCACTTCGAATGCAGCTTTGCCAACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGC‑GGGCATGGCCTGCCC‑GGG < 1:1113313/150‑1 CACTTCGAATGCAGCTTTGCCAACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCAGGCCAT‑GCCCGCCC‑GGGC‑TTTGTGTTGATTCAGACGGCGG > 1:694122/1‑150 ACTTCGAATGCAGCTTTGCCAACGCGTGCCTCTAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCAGGCCAT‑GCCCGCCC‑GGGC‑TTTGTGTTGATTCAGACGGCGGA < 2:694122/150‑1 CAACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCAGGCCAT‑GCCCGCCC‑GGGC‑TTT < 1:9099/111‑1 CAACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCAGGCCAT‑GCCCGCCC‑GGGC‑TTT > 2:9099/1‑111 TCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCAGGCCAT‑GCCCGCCC‑GGGC‑TTTGTGTTGAT < 1:793880/108‑1 TCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGCAGGCCAT‑GCCCGCCC‑GGGC‑TTTGTGTTGAT > 2:793880/1‑108 ATCAACACAAAGCCCGGGC‑GGGCATGGCCTGCCCGGGGCATTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATC > 1:520993/1‑89 ATCAACACAAAGCCCGGGC‑GGGCATGGCCTGCCCGGGGCATTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATC < 2:520993/89‑1 CCGGGC‑GGGCATGGCCTGCCC‑GGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCG < 1:740317/145‑1 CCGGGC‑GGGCATGGCCTGCCC‑GGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCG > 2:740317/1‑145 GGGC‑GGGCATGGCCTGCCC‑GGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTG < 1:176614/92‑1 GGGC‑GGGCATGGCCTGCCC‑GGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTG > 2:176614/1‑92 GGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTTGAATTG < 1:971598/150‑1 GC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTTGAATTGGA < 1:1121449/150‑1 CTGATGCCCTCGCGGAGTTCGAACGACACCACTTCGAATGCAGCTTTGCCAACGAGTGCCTCAAAGCTGTAGCGCAAATCAGATTGGCTAGGCATAAAAGATCCTTGTCCGCCGTCTGAATCAACACAAAGCCCGGGC‑GGGCATGGCCTGCCC‑GGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2991428‑2991583‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccc‑gggC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTTGAATTGGA > NC_002947/4611123‑4611271 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |