New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2991583	40 (0.920)	10 (0.240)	9/240	NT	17.6%	intergenic (‑61/+14)	vgrG‑I/hcpC‑I	type VI secretion system protein/hemolysin‑coregulated protein
	?	NC_002947	4611123 =	56 (1.370)					intergenic (+39/‑2068)	hcpC‑II/PP_4084	hemolysin‑coregulated protein/hypothetical protein

AACTACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTTGAATTGGAG  >  NC_002947/4610977‑4611272                                                                                                                                                   |                                                                                                                                                       aaCTACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑ttt                                                                                                                                                    <  1:983587/150‑1 (MQ=39)   cTACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAGATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTtgt                                                                                                                                                  >  2:780453/1‑150 (MQ=255)      cacCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAGATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGtt                                                                                                                                               <  1:780453/150‑1 (MQ=255)        gccATCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGa                                                                                                                                             <  1:385498/149‑1 (MQ=25)        cccAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGGCCGGGC‑TTTGTGTTGa                                                                                                                                             <  1:587590/150‑1 (MQ=38)         ccAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGAt                                                                                                                                            >  2:431566/1‑150 (MQ=38)         ccAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGAt                                                                                                                                            <  1:112336/150‑1 (MQ=39)         ccAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGAt                                                                                                                                            >  2:112336/1‑150 (MQ=38)              tGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGa                                                                                                                                       <  1:101615/150‑1 (MQ=35)                gTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGAcg                                                                                                                                     >  1:51406/1‑150 (MQ=34)                    cacttcgaatgcagctttgccaacgagtgcctcaaagctgtagcgcaaatcagattggctaggcataaaagatccttgtccgccgtctgaatcaacacaaagcccgggcaggccatgcccgcccgggC‑TTTGTGTTGATTCAGAcggcgg                                                                                                                                 >  1:694122‑M2/128‑150 (MQ=255)                     acttcgaatgcagctttgccaacgcgtgcctctaagctgtagcgcaaatcagattggctaggcataaaagatccttgtccgccgtctgaatcaacacaaagcccgggcaggccatgcccgcccgggC‑TTTGTGTTGATTCAGACGGCGGa                                                                                                                                <  2:694122‑M2/24‑1 (MQ=255)                     aGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGa                                                                                                                                >  2:1093130/1‑150 (MQ=35)                              ggCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCt                                                                                                                       <  2:776512/150‑1 (MQ=35)                              ggCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCt                                                                                                                       <  1:344300/150‑1 (MQ=35)                               gCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCtt                                                                                                                      <  1:776069/150‑1 (MQ=35)                                 gTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCtttt                                                                                                                    <  1:676414/150‑1 (MQ=34)                                  tATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTa                                                                                                                   <  2:185169/150‑1 (MQ=35)                                  tATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTa                                                                                                                   <  1:41360/150‑1 (MQ=35)                                   aTCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTAt                                                                                                                  <  1:36037/150‑1 (MQ=35)                                    tCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATg                                                                                                                 <  2:716906/150‑1 (MQ=35)                                        caacgagtgcctcaaagctgtagcgcaaatcagattggctaggcataaaagatccttgtccgccgtctgaatcaacacaaagcccgggcaggccatgcccgcccgggC‑ttt                                                                                                                                                    <  1:9099‑M2/4‑1 (MQ=255)                                        caacgagtgcctcaaagctgtagcgcaaatcagattggctaggcataaaagatccttgtccgccgtctgaatcaacacaaagcccgggcaggccatgcccgcccgggC‑ttt                                                                                                                                                    >  2:9099‑M2/108‑111 (MQ=255)                                         aGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAg                                                                                                            <  1:113298/150‑1 (MQ=35)                                          gATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGc                                                                                                           >  2:1121449/1‑150 (MQ=35)                                                 tGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTg                                                                                                    >  2:141860/1‑150 (MQ=35)                                                   tcaaagctgtagcgcaaatcagattggctaggcataaaagatccttgtccgccgtctgaatcaacacaaagcccgggcaggccatgcccgcccgggC‑TTTGTGTTGAt                                                                                                                                            >  2:793880‑M2/97‑108 (MQ=255)                                                   tcaaagctgtagcgcaaatcagattggctaggcataaaagatccttgtccgccgtctgaatcaacacaaagcccgggcaggccatgcccgcccgggC‑TTTGTGTTGAt                                                                                                                                            <  1:793880‑M2/12‑1 (MQ=255)                                                    gCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGAtt                                                                                                 >  2:897354/1‑150 (MQ=35)                                                     cTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGAttt                                                                                                <  2:985122/150‑1 (MQ=35)                                                      tCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCAGCGGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTCGCCAATCTGATTTg                                                                                               >  1:307984/1‑150 (MQ=255)                                                        aCGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTgcg                                                                                             >  1:618604/1‑150 (MQ=35)                                                        aCGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTgcg                                                                                             >  1:613922/1‑150 (MQ=35)                                                           aTGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGtt                                                                                                                                               >  2:331533/1‑97 (MQ=38)                                                           aTGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGtt                                                                                                                                               <  1:331533/97‑1 (MQ=39)                                                                   aaTACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTg                                                                                  >  2:50949/1‑150 (MQ=34)                                                                   aaTACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTg                                                                                  >  2:948535/1‑150 (MQ=35)                                                                    aTACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGa                                                                                 >  2:112959/1‑150 (MQ=33)                                                                     tACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAg                                                                                <  1:497682/150‑1 (MQ=33)                                                                        cGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCa                                                                             <  1:798031/150‑1 (MQ=32)                                                                           aGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTc                                                                          <  1:948535/150‑1 (MQ=32)                                                                              ctctGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTTAGACGGCGGACAAGGATCTTTTATGCCTAGCCaa                                                                                                        >  1:619295/1‑117 (MQ=18)                                                                              ctctGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCaa                                                                                                        <  2:619295/117‑1 (MQ=33)                                                                                    cgacTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCaaa                                                                 <  2:51406/150‑1 (MQ=32)                                                                                    cgacTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCaaa                                                                 <  1:431566/150‑1 (MQ=32)                                                                                        tGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGc                                                                                                           <  2:821362/104‑1 (MQ=32)                                                                                        tGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGc                                                                                                           >  1:821362/1‑104 (MQ=33)                                                                                        tGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAAGCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTg                                                             >  1:1087768/1‑150 (MQ=17)                                                                                          gcgcgcACCCGCCGCCTGACCCGTGAAAGTGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGaa                                                           >  1:579598/1‑150 (MQ=21)                                                                                            gcgcACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAAtt                                                         >  1:839786/1‑150 (MQ=35)                                                                                            gcgcACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAAtt                                                         >  1:808877/1‑150 (MQ=35)                                                                                                  ccgccgCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCaa                                                                                                        <  1:607209/97‑1 (MQ=33)                                                                                                  ccgccgCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTATTATGCCTAGCCaa                                                                                                        >  2:607209/1‑97 (MQ=21)                                                                                                   cgccgcCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAgtg                                                  <  2:839786/150‑1 (MQ=35)                                                                                                             atcaacacaaagcccgggcgggcatggcctgcccggggCATTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATc                                                                                                      <  2:520993‑M2/51‑1 (MQ=255)                                                                                                             atcaacacaaagcccgggcgggcatggcctgcccggggCATTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATc                                                                                                      >  1:520993‑M2/39‑89 (MQ=255)                                                                                                              ccGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAg                                                                                <  2:131897/109‑1 (MQ=31)                                                                                                              ccGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAg                                                                                >  1:131897/1‑109 (MQ=31)                                                                                                              ccGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGa                                       >  1:313783/1‑150 (MQ=33)                                                                                                               cGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGaa                                      <  1:141860/150‑1 (MQ=33)                                                                                                                       tGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGa                              <  2:808877/150‑1 (MQ=32)                                                                                                                       tGCCCCGGGCAGGCCATGCACGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGa                              >  1:1036659/1‑150 (MQ=17)                                                                                                                           ccgggcgggcatggcctgcccgggC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCcgcg                               <  1:740317‑M2/121‑1 (MQ=255)                                                                                                                           ccgggcgggcatggcctgcccgggC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCcgcg                               >  2:740317‑M2/25‑145 (MQ=255)                                                                                                                             gggcgggcatggcctgcccgggC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTg                                                                                  >  2:176614‑M2/23‑92 (MQ=255)                                                                                                                             gggcgggcatggcctgcccgggC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTg                                                                                  <  1:176614‑M2/70‑1 (MQ=255)                                                                                                                                 aGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAgc                    >  2:672953/1‑150 (MQ=32)                                                                                                                                     cATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCAc                <  1:897354/150‑1 (MQ=32)                                                                                                                                      aTGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCAcc               >  1:943010/1‑150 (MQ=32)                                                                                                                                         cccgcccgGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCtt            >  1:201797/1‑150 (MQ=32)                                                                                                                                         cccgcccgGGC‑TTTCTGTTGATTTAGACGGCGGACAAGGATCTTTTATGCCGAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCActcat            <  1:587952/150‑5 (MQ=255)                                                                                                                                          ccgcccgGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCttt           <  2:337117/150‑1 (MQ=32)                                                                                                                                          ccgcccgGAC‑TTTGTATTGATTCAGACGGCGGACCTGGATTTTCTATGCCTATCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCttt           <  2:618604/150‑1 (MQ=11)                                                                                                                                                gggC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTTGAATTg     <  1:971598‑M2/147‑1 (MQ=255)                                                                                                                                                  gC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTTGAATTGGa   <  1:1121449‑M2/149‑1 (MQ=255)                                                                                                                                                   c‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTTGAATTGGAg  <  1:112959/150‑1 (MQ=35)                                                                                                                                                   |                                                                                                                                                       AACTACACCCAGCTGGTTGAAGTATCGCTGGCGTATCGAAAGATCACGTGGGCTCACGATGTAGCCAATACCGAAGGCTCTGACGACTGGCGCGCACCCGCCGCCTGACCCGTGCAAATGCCCCGGGCAGGCCATGCCCGCCCGGGC‑TTTGTGTTGATTCAGACGGCGGACAAGGATCTTTTATGCCTAGCCAATCTGATTTGCGCTACAGCTTTGAGGCACTCGTTGGCAAAGCTGAATTCGAAGTGGTGTCGTTCGAACTCCGCGAGGGCATCAGCGCACCCTTTGAATTGGAG  >  NC_002947/4610977‑4611272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.