New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4116129 =	42 (0.970)	3 (0.070)	3/240	NT	7.6%	coding (501/2187 nt)	ycaO	ribosomal protein S12 methylthiotransferase accessory factor
	?	NC_002947	4116228 =	33 (0.810)					coding (402/2187 nt)	ycaO	ribosomal protein S12 methylthiotransferase accessory factor

AGGTGGTGCAGACCGGCCCTGAGTTCGTGATCGAAGTGGTCGACAACCTCGATGCCGATGCCCAAGGGTTGCTGATGCCGGTGTCGGACACCAGCACCTATATCCCCGGCAAGGACCTGCCGCTGGAGCAGACCATTGCCAACATGTCGGGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4116283‑4116129 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcatcGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACGGTCCTTGTCGGAGATGTCTTCGGGCAGTTCGACCTGGATCTTGAAG  >  NC_002947/4116228‑4116372                                                                                                                                                                                                                                                                                                              AGGTGGTGCAGAACGGATCTGAGTTCGTGATCGAAGTGGTCGACAACCTCGATGCCGATGCCCAAGGGTTGCTGATGCCGGTGTCGGACACCAGCACCTATATCCCCGGCAAGGACCTGCCGCTGGAGCAGACCATTGCCAACATGTCGG                                                                                                                                                        <  2:758668/150‑1      GTGCAGACCGGCCCTGAGTTCGTGATCGAAGTGGTCGACAACCTCGATGCCGATGCCCAAGGGTTGCTGATGCCGGTGTCGGACACCAGCACCTATATCCCCGGCAAGGACCTGCCGCTGGAGCAGACCATTGCCAACATGTCGGGCATC                                                                                                                                                   <  1:678529/150‑1                                               CCTCGATGCCGATGCCCAAGGGTTGCTGATGCCGGTGTCGGACACCAGCACCTATATCCCCGGCAAGGACCTGCCGCTGGAGCAGACCATTGCCAACATGTCGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGC                                                                                                          >  1:778798/1‑150                                                      GCCGATGCCCAAGGGTTGCTGATGCCGGTGTCGGACACCAGCACCTATATCCCCGGCAAGGACCTGCCGCTGGAGCAGACCATTGCCAACATGTCGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTG                                                                                                   >  2:72871/1‑150                                                                                            CAGCACCTATATCCCCGGCAAGGACCTGCCGCTGGAGCAGACCATTGCCAACATGTCGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCA                                                             <  1:72871/150‑1                                                                                                                                                      GGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACGGTCCTTGTCGGAGATGTCTTCGGGCAGTTCGACCTGGATCTTGAA   <  1:202470/150‑1                                                                                                                                                       GCATCGGCATCGAGGTTGTCGACCACTTCGATCCCGACTTCTGGGCCGGTCGCAACCACCTTTATTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACGGTCCTTGTCGGAGATGTCTTCGGGCAGTTCGACCTGGATCTTGAAG  >  1:570570/1‑150                                                                                                                                                                                                                                                                                                              AGGTGGTGCAGACCGGCCCTGAGTTCGTGATCGAAGTGGTCGACAACCTCGATGCCGATGCCCAAGGGTTGCTGATGCCGGTGTCGGACACCAGCACCTATATCCCCGGCAAGGACCTGCCGCTGGAGCAGACCATTGCCAACATGTCGGGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4116283‑4116129 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcatcGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCACCACCTTTTTTACCGTGCAGCGGTCGATGGAGCGCAGGATGCCTTGACGGTCCTTGTCGGAGATGTCTTCGGGCAGTTCGACCTGGATCTTGAAG  >  NC_002947/4116228‑4116372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.