New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4116129 =	42 (0.970)	3 (0.070)	3/240	NT	7.6%	coding (501/2187 nt)	ycaO	ribosomal protein S12 methylthiotransferase accessory factor
	?	NC_002947	4116228 =	33 (0.810)					coding (402/2187 nt)	ycaO	ribosomal protein S12 methylthiotransferase accessory factor

CCGAGGCCAGCGCAGCCTCCTTGGTGGCGCCTTTACCGTTGGTAAAGCACATCGGCGACTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCAC  >  NC_002947/4115984‑4116278                                                                                                                                                  |                                                                                                                                                      cttcaagatccaggtcgaactgcccgaagacatctccgacaaggaccgtcaaggcatcctgcgctccatcgaccgctgcacggtaataaaggtggttgcgaccggcccagaagtcgggatcgaagtggtcgacaacctcgatgccgatgc                                                                                                                                                   >  1:570570‑M1/146‑150 (MQ=255)  ttcaagatccaggtcgaactgcccgaagacatctccgacaaggaccgtcaaggcatcctgcgctccatcgaccgctgcacggtaaaaaaggtggtgcagaccggccctgagttcgtgatcgaagtggtcgacaacctcgatgccgatgcc                                                                                                                                                  <  1:202470‑M1/6‑1 (MQ=255)                cctcctTGGTGGCGCCTTTACCGTTGGTAAAGCACATCGGCGACTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCaa                                                                                                                                    <  1:156089/150‑1 (MQ=255)                  tcctTGGTGGCGCCTTTACCGTTGGTAAAGCACATCGGCGACTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATg                                                                                                                                  <  1:516646/150‑1 (MQ=255)                   cctTGGTGGCGCCTTTACCGTTGGTAAAGCACATCGGCGACTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATgg                                                                                                                                 >  2:321283/1‑150 (MQ=255)                    ctTGGTGGCGCCTTTACCGTTGGTAAAGCACATCGGCGACTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGt                                                                                                                                >  1:268537/1‑150 (MQ=255)                      tggtggCGCCTTTACCGTTGGTAAAGCACATCGGCGACTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCt                                                                                                                              <  1:321283/150‑1 (MQ=255)                              ccTTTACCGTTGGTAAAGCACATCGGCGACTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGtt                                                                                                                                         >  2:1091559/1‑131 (MQ=255)                              ccTTTACCGTTGGTAAAGCACATCGGCGACTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGtt                                                                                                                                         <  1:1091559/131‑1 (MQ=255)                                tttACCGTTGGTAAAGCACATCGGCGACTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCgg                                                                                                                    >  2:230635/1‑150 (MQ=255)                                    ccGTTGGTAAAGCACATCGGCGACTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAgg                                                                                                                <  2:268537/150‑1 (MQ=255)                                      gTTGGTAAAGCACATCGGCGACTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTc                                                                                                              >  1:381706/1‑150 (MQ=255)                                                   aTCGGCGACTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGata                                                                                                 <  1:230635/150‑1 (MQ=255)                                                    tCGGCGACTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGatat                                                                                                >  2:886817/1‑150 (MQ=255)                                                      ggCGACTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGAt                                                                                                                                                     >  1:577485/1‑95 (MQ=255)                                                      ggCGACTGCGCATCGCGTACGTGCAGCGACCAGACGCTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGAt                                                                                                                                                     <  2:577485/95‑1 (MQ=255)                                                         gACTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCggg                                                                                                     <  2:334107/140‑1 (MQ=255)                                                         gACTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCggg                                                                                                     >  1:334107/1‑140 (MQ=255)                                                           cTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCt                                                                                         >  2:139174/1‑150 (MQ=255)                                                            tgcgctccatcgaccgctgcacggtaaaaaaggtggtgcagaccggccctgagttcgtgatcgaagtggtcgacaacctcgatgccGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTg                                                                                        <  1:72871‑M1/64‑1 (MQ=255)                                                            tGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCgg                                                                                                      <  1:399658/136‑1 (MQ=255)                                                            tGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCgg                                                                                                      >  2:399658/1‑136 (MQ=255)                                                                 atagcgTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTc                                                                                   >  1:330783/4‑150 (MQ=255)                                                                  tCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTcc                                                                                  <  2:1006340/150‑1 (MQ=255)                                                                         cGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATACGTGCTGGTGTCCGTCAccc                                                                           <  2:381706/150‑2 (MQ=255)                                                                            gCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCa                                                                        >  1:207159/1‑150 (MQ=255)                                                                             cAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGccc                                                                                                                                                 >  2:749686/1‑76 (MQ=255)                                                                             cAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGccc                                                                                                                                                 <  1:749686/76‑1 (MQ=255)                                                                                              ggACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAg                                                                                              >  2:972293/1‑110 (MQ=255)                                                                                              ggACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAg                                                                                              >  2:972617/1‑110 (MQ=255)                                                                                              ggACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAg                                                                                              <  1:972617/110‑1 (MQ=255)                                                                                              ggACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAg                                                                                              <  1:972293/110‑1 (MQ=255)                                                                                               gACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTg                                                                                        >  1:534431/1‑115 (MQ=255)                                                                                               gACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTg                                                                                        <  2:534431/115‑1 (MQ=255)                                                                                                aCAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCAt                                                                       >  1:267010/1‑131 (MQ=255)                                                                                                aCAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCAt                                                                       <  2:267010/131‑1 (MQ=255)                                                                                                  cagaccggccctgagttcgtgatcgaagtggtcgacaacctcgatgccGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGggcatcggc                                                  >  2:72871‑M1/49‑150 (MQ=255)                                                                                                         gccctgagttcgtgatcgaagtggtcgacaacctcgatgccGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAgg                                           >  1:778798‑M1/42‑150 (MQ=255)                                                                                                         cgcCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAgg                                           >  2:449931/1‑150 (MQ=255)                                                                                                                    gatctcgatctTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGgtg                                                                                     <  2:115646/97‑1 (MQ=255)                                                                                                                    gatctcgatctTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGgtg                                                                                     >  1:115646/1‑97 (MQ=255)                                                                                                                     atctcgatctTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACt                               >  2:352558/1‑150 (MQ=255)                                                                                                                              ttCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACg                      >  2:219514/1‑150 (MQ=255)                                                                                                                                cATCCCCAACCCGGCGAGGATGCCCGACAGGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTTGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGaa                    <  1:539876/150‑1 (MQ=255)                                                                                                                                     ccAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACAcc                                                                            >  1:955363/1‑89 (MQ=255)                                                                                                                                     ccAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACAcc                                                                            <  2:955363/89‑1 (MQ=255)                                                                                                                                     ccAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGa                           >  2:131469/1‑138 (MQ=255)                                                                                                                                     ccAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAg               >  2:1015140/1‑150 (MQ=255)                                                                                                                                     ccAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGGCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGa                           <  1:131469/138‑1 (MQ=255)                                                                                                                                               gAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTg                                                                                        >  2:1067425/1‑67 (MQ=255)                                                                                                                                               gAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTg                                                                                        <  1:1067425/67‑1 (MQ=255)                                                                                                                                                  GATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGcac  <  1:678529‑M1/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                      CCGAGGCCAGCGCAGCCTCCTTGGTGGCGCCTTTACCGTTGGTAAAGCACATCGGCGACTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGGTGTCCGACACCGGCATCAGCAACCCTTGGGCATCGGCATCGAGGTTGTCGACCACTTCGATCACGAACTCAGGGCCGGTCTGCAC  >  NC_002947/4115984‑4116278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.