New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4563456 = | 24 (0.550) | 3 (0.070) | 3/238 | NT | 12.1% | coding (449/2316 nt) | vgrG‑III | type VI secretion system protein |
? | NC_002947 | 4563523 = | 21 (0.520) | coding (382/2316 nt) | vgrG‑III | type VI secretion system protein |
CGCGCGGTTGCGTTCGAACTGGCGGATCTTTCAGCAGAAAACCGTGCCGCAGATTCTTGAACTCATGTTCAAGCGTCAGGGCATCACCCGCTTTGAGCTGAAAAGCAGCGCGCAGCACCAAGTGCGGGAGTTTTGTGTTCAGGCGGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4563605‑4563456 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggtgaTGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGG > NC_002947/4563523‑4563608 CGCGCGGTTGCGTTCGAACTGGCGGATCTTTCAGCAGAAAACCGTGCCGCAGATTCTTGAACTCATGTTCAAGCGTCAGGGCATCACCCGCTTTGAGCTGAAAAGCAGCGCGCAGCACCAAGTGCGGGAGTTTTGTGTTCAGGCGGGTGA < 2:1097067/150‑1 CCGTGCCGCAGATTCTTGAACTCATGTTCAAGCGTCAGGGCATCACCCGCTTTGAGCTGAAAAGCAGCGCGCAGCACCAAGTGCGGGAGTTTTGTGTTCAGGCGG > 1:428418/1‑105 CCGTGCCGCAGATTCTTGAACTCATGTTCAAGCGTCAGGGCATCACCCGCTTTGAGCTGAAAAGCAGCGCGCAGCACCAAGTGCGGGAGTTTTGTGTTCAGGCGG < 2:428418/105‑1 CCCGCTTTGAGCTGAAAAGCAGCGCGCAGCACCAAGTGCGGGAGTTTTGTGTCCAGGCGGGTGATGCCCTGACGCTTGAACAGGAGTTCAAGAATCCGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACTCAACCGCGCGCGG > 2:605458/1‑150 CCGCTTTGTGCTGAAAAGCAGCGCGCAGCACCAAGTGCGGGAGTTTTGTGTTCAGGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTC < 2:232759/131‑1 CCGCTTTGAGCTGAAAAGCAGCGCGCAGCACCAAGTGCGGGAGTTTTGTGTTCAGGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCGGAAAGATCCGCCAGTTC > 1:232759/1‑131 CGCGCGGTTGCGTTCGAACTGGCGGATCTTTCAGCAGAAAACCGTGCCGCAGATTCTTGAACTCATGTTCAAGCGTCAGGGCATCACCCGCTTTGAGCTGAAAAGCAGCGCGCAGCACCAAGTGCGGGAGTTTTGTGTTCAGGCGGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4563605‑4563456 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggtgaTGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGG > NC_002947/4563523‑4563608 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |