New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4563456 =	24 (0.550)	3 (0.070)	3/238	NT	12.1%	coding (449/2316 nt)	vgrG‑III	type VI secretion system protein
	?	NC_002947	4563523 =	21 (0.520)					coding (382/2316 nt)	vgrG‑III	type VI secretion system protein

TCTGCCTTAAGCGCGCCCCGGCTGAGCAGCCCAAACGACAGCAAGCGGTCGGTAACGATCAGCGTGTGCTGCCGGGCGCAGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCG  >  NC_002947/4563312‑4563605                                                                                                                                                 |                                                                                                                                                      tctGCCTTAAGCGCGCCCCGGCTGAGCAGCCCAAACGACAGCAAGCGGTCGGTAACGATCAGCGTGTGCTGCCGGGCGCAGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCAccc                                                                                                                                                  <  2:497492/150‑1 (MQ=255)    gCCTTAAGCGCGCCCCGGCTGAGCAGCCCAAACGACAGCAAGCGGTCGGTAACGATCAGCGTGTGCTGCCGGGCGCAGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGcc                                                                                                                                               <  1:42896/150‑1 (MQ=255)      cTTAAGCGCGCCCCGGCTGAGCAGCCCAAACGACAGCAAGCGGTCGGTAACGATCAGCGTGTGCTGCCGGGCGCAGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCCGTTTCACCCGCCTg                                                                                                                                             >  1:715797/1‑150 (MQ=255)                       tGAGCAGCCCAAACGACAGCAAGCGGTCGGTAACGATCAGCGTGTGCTGCCGGGCGCAGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCa                                                                                                                            >  2:515821/1‑150 (MQ=255)                         agcagcCCAAACGACAGCAAGCGGTCGGTAACGATCAGCGTGTGCTGCCGGGCGCAGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACt                                                                                                                          >  2:500805/1‑150 (MQ=255)                            agcCCAAACGACAGCAAGCGGTCGGTAACGATCAGCGTGTGCTGCCGGGCGCAGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTgg                                                                                                                       <  1:215820/150‑1 (MQ=255)                                  aaCGACAGCAAGCGGTCGGTAACGATCAGCGTGTGCTGCCGGGCGCAGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGtgctgc                                                                                                                 <  1:1074054/150‑1 (MQ=255)                                  aaCGACAGCAAGCGGTCGGTAAAGATCAGCGTGTGCTGCCGGGCGCAGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGtgctgc                                                                                                                 <  2:559368/150‑1 (MQ=255)                                       cAGCAAGCGGTCGGTAACGATCAGCGTGTGCTGCCGGGCGCAGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCgct                                                                                                            <  1:509242/150‑1 (MQ=255)                                                           tCAGCGTGTGCTGCCGGGCGCAGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGt                                                                                                                      <  1:532341/120‑1 (MQ=255)                                                           tCAGCGTGTGCTGCCGGGCGCAGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGt                                                                                                                      >  2:532341/1‑120 (MQ=255)                                                           ccgcgcgcggttgagttcgaactggcggatctttcagcagaaaaccgtgccgcggattcttgaactcctgttcaagcgtcagggcaTCACCCGCCTGGACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCggg                                                                                        >  2:605458‑M1/87‑150 (MQ=255)                                                                      tgcCGGGCGCAGTGTTCGAAGCAGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGa                                                                             >  2:342849/1‑150 (MQ=255)                                                                         cGGGCGCAGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGACGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGc                                                                          <  1:515821/150‑1 (MQ=255)                                                                             gaactggcggatctttccgcagaaaaccgtgccgcagattcttgaactcatgttcaagcgtcagggcaTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCgg                                                                                         >  1:232759‑M1/69‑131 (MQ=255)                                                                             gaactggcggatctttcagcagaaaaccgtgccgcagattcttgaactcatgttcaagcgtcagggcaTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCACAAAGCgg                                                                                         <  2:232759‑M1/63‑1 (MQ=255)                                                                               cAGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAAc                                                                    <  1:162235/150‑1 (MQ=255)                                                                                aGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGCTGGATGCAGTCGAGGTCGGTTTCACAAGACTGAAGACGAAACGCCCGCACTTGGTGCGGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACa                                                                   >  2:971114/1‑150 (MQ=255)                                                                                    ttCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGTCGATGGAGGAAGGCGGGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAg                                                               >  1:25365/1‑150 (MQ=255)                                                                                                    aaCCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGc                                               <  1:245527/150‑1 (MQ=255)                                                                                                     aCCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCa                                              >  1:540585/1‑150 (MQ=255)                                                                                                        ccTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACgg                                           >  1:537332/1‑150 (MQ=255)                                                                                                                             ggatgAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCtt                                                                        >  1:595954/1‑100 (MQ=255)                                                                                                                             ggatgAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCtt                                                                        <  2:595954/100‑1 (MQ=255)                                                                                                                              gatnAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCa                     >  2:699066/1‑150 (MQ=255)                                                                                                                                     tCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCTCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGaa                               <  2:1023881/133‑1 (MQ=255)                                                                                                                                     tCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCTCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGaa                               >  1:1023881/1‑133 (MQ=255)                                                                                                                                                 TCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACcgcgcg  <  2:1097067‑M1/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                      TCTGCCTTAAGCGCGCCCCGGCTGAGCAGCCCAAACGACAGCAAGCGGTCGGTAACGATCAGCGTGTGCTGCCGGGCGCAGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCG  >  NC_002947/4563312‑4563605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.