New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4697489 | 49 (1.130) | 3 (0.070) | 3/242 | NT | 5.4% | coding (594/696 nt) | kdpE | two‑component system DNA‑binding response regulator KdpE |
? | NC_002947 | = 4697521 | 58 (1.410) | coding (562/696 nt) | kdpE | two‑component system DNA‑binding response regulator KdpE |
ACGCGTCCAGGCCCTGCAGGCGTTCGCCCAGCCCTTTGGGCTGTGTGCGGGTTATGCTGTCGGCGCCACCAACCTGTAGCCAACCCCCGCCTCGGTAATGATGAACCGCGGCGCCGTGGGGTCATCGCCCAGCTTCTGTCGCAGATGCCCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4697336‑4697489 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaccCATGCGGAGGATACCCACTACCTGCGCATCGTGGTCGGGCATCTGCGACAGAAGCTGGGCGATGACCCCACGGCGCCGCGGTTCATCATTACCGAGGCGGGGGTTGGCTACAGGTTGGTGGCGCCGACAGCATAACCCGCACAC < NC_002947/4697521‑4697378 ACGCGTCCAGGCCCTGCAGGCGTTGGCCCAGCCCTTTGGGCTGTGTGCGGGTTATGCTGTCGGCGCCACCAACCTGTAGCCAACCCCCGCCTCGGTAATGATGAACCGCGGCGCCGTGGGGTCATCGCCCAGCTTCTGTCGCAGATGCCC > 1:116808/1‑150 AGGCCCTGCAGGCGTTCGCCCAGCCCTTTGGGCTGTGTGCGGGTTATGCTGTCGGCGCCACCAACCTGTAGCCAACCCCCGCCTCGGTAATGATGAACCGCGGCGCCGTGGGGTCATCGCCCAGCTTCTGTCGCAGATGCCCGACCCATG > 1:527215/1‑150 CCTGCAGGCGTTCGCCCAGCCCTTTGGGCTGTGTGCGGGTTATGCTGTCGGCGCCACCAACCTGTAGCCAACCCCCGCCTCGGTAATGATGAACCGCGGCGCCGTGGGGTCATCGCCCAGCTTCTGTCGCAGATGCCC < 1:816746/138‑1 CCTGCAGGCGTTCGCCCAGCCCTTTGGGCTGTGTGCGGGTTATGCTGTCGGCGCCACCAACCTGTAGCCAACCCCCGCCTCGGTAATGATGAACCGCGGCGCCGTGGGGTCATCGCCCAGCTTCTGTCGCAGATGCCC > 2:816746/1‑138 TGTGTGCGGGTTATGCTGTCGGCGCCACCAACCTGTAGCCAACCCCCGCCTCGGTAATGATGAACCGCGGCGCCGTGGGGTCATCGCCCAGCTTCTGTCGCAGATGCCCGACCCATGCGGAGGATACCCACTACCTGCGCATCGTGGTCG < 2:527215/150‑1 CAACCTGTAGCCAACCCCCGCCTCGGTAATGATGAACCGCGGCGCCGTGGGGTCATCGCCCAGCTTCTGTCGCAGATGCCCGACCCATGCGGAGGATACCCACTACCTGCGCATCGTGGTCGG > 1:1059849/1‑123 CAACCTGTAGCCAACCCCCGCCTCGGTAATGATGAACCGCGGCGCCGTGGGGTCATCGCCCAGCTTCTGTCGCAGATGCCCGACCCATGCGGAGGATACCCACTACCTGCGCATCGTGGTCGG < 2:1059849/123‑1 CCGACCCATGCGGAGGATACCCACTACCTGCGCATCGTGGTCGGGCATCTGCGACAGAAGCTGGGCGATGACCCCACGGCGCCGCGGTTCATCATTACCGAGGCGGGGGTTGGCTACAGGTTGGTGGCGCCGACAGCATAACCCGCACAC > 2:116808/1‑150 ACGCGTCCAGGCCCTGCAGGCGTTCGCCCAGCCCTTTGGGCTGTGTGCGGGTTATGCTGTCGGCGCCACCAACCTGTAGCCAACCCCCGCCTCGGTAATGATGAACCGCGGCGCCGTGGGGTCATCGCCCAGCTTCTGTCGCAGATGCCCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4697336‑4697489 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaccCATGCGGAGGATACCCACTACCTGCGCATCGTGGTCGGGCATCTGCGACAGAAGCTGGGCGATGACCCCACGGCGCCGCGGTTCATCATTACCGAGGCGGGGGTTGGCTACAGGTTGGTGGCGCCGACAGCATAACCCGCACAC < NC_002947/4697521‑4697378 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |