| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5196165 | 47 (1.080) | 3 (0.070) | 3/238 | NT | 6.6% | coding (398/690 nt) | ybgJ | allophanate hydrolase subunit 1 |
| ? | NC_002947 | = 5196181 | 41 (1.010) | coding (382/690 nt) | ybgJ | allophanate hydrolase subunit 1 | |||||
CCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5196009‑5196165‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccggtgTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCAGCGTGGGTATTGCCGAGCGCCAGACGGCGGCCTACCCGGCA < NC_002947/5196181‑5196038 CCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAA > 2:632013/1‑150CCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAA > 2:668854/1‑150 CCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATG < 2:104741/150‑1 TCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGTTTGCCCTGGGCTTCGCACCGGG > 1:20213/1‑80 TCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTGTTTGCCCTGGGCTTCGCACCGGG < 2:20213/80‑1 CCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGGCTACCCCACGCAAGCGCGTGGCGGCGGGCAGCGTGGGTATTGCCGAGCGCCAGACGGCGGCCTACCCGGCA > 1:1093446/1‑150 CCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCAGCGTGGGTATTGCCGAGCGCCAGACGGCGGCCTACCCGGCA > 1:786940/1‑150 CCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCAGCGTGGGTATTGCCGAGCGCCAGACGGCGGCCTACCCGGCA < 2:629150/150‑1 CCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCAGCGTGGGTATTGCCGAGCGCCAGACGGCGGCCTACCCGGCA > 2:921265/1‑150 CCGGTGTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGCGACGACGCCCAGCATAGGTAGTGCCGATCGCCAGACGGCGGCCTACCCGGCc > 2:737978/1‑149 CCGATCAGGTTCCAGCCACCCGGCGATACTGCCGGGTAGGCCGCCGTCTGGCGCTCGGCAATACCCACGCTGCCCGCCGCCACGCGCTTGCGTGGGGTACTCAGACGAGGGCTGGCCAGGCGCTCGTCGACCAGGCCCATGAAGCCGAAACCCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5196009‑5196165‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccggtgTTTGCCCTGGGCTTCGCACCGGGTTTCGGCTTCATGGGCCTGGTCGACGAGCGCCTGGCCAGCCCTCGTCTGAGTACCCCACGCAAGCGCGTGGCGGCGGGCAGCGTGGGTATTGCCGAGCGCCAGACGGCGGCCTACCCGGCA < NC_002947/5196181‑5196038 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |